JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SH3BGRL2_chr6_79626329_79708655	0/0	t0021	4280	2	1	0	0	1	0	copy fasta	SH3BGRL2	chr6	79626329	79708655
SH3BGRL2_chr6_79626329_79708655	0/0	t0022	4279	1	1	0	0	0	0	copy fasta	SH3BGRL2	chr6	79626329	79708655
SH3BGRL2_chr6_79626329_79708655	0/0	t0023	4279	1	0	1	0	0	0	copy fasta	SH3BGRL2	chr6	79626329	79708655
SH3BGRL2_chr6_79626329_79708655	0/0	t0024	4279	1	0	0	0	1	0	copy fasta	SH3BGRL2	chr6	79626329	79708655
SH3BGRL2_chr6_79626329_79708655	0/0	t0025	4279	1	1	0	0	0	0	copy fasta	SH3BGRL2	chr6	79626329	79708655
SH3BGRL2_chr6_79626329_79708655	0/0	t0026	4278	1	1	0	0	0	0	copy fasta	SH3BGRL2	chr6	79626329	79708655
SH3BGRL2_chr6_79626329_79708655	0/0	t0027	4279	1	1	0	0	0	0	copy fasta	SH3BGRL2	chr6	79626329	79708655
SH3BGRL2_chr6_79626329_79708655	0/0	t0028	4279	1	1	0	0	0	0	copy fasta	SH3BGRL2	chr6	79626329	79708655
SH3BGRL2_chr6_79626329_79708655	0/0	t0029	4278	1	1	0	0	0	0	copy fasta	SH3BGRL2	chr6	79626329	79708655
SH3BGRL2_chr6_79626329_79708655	0/0	t0030	4280	1	0	1	0	0	0	copy fasta	SH3BGRL2	chr6	79626329	79708655
SH3BGRL2_chr6_79626329_79708655	0/0	t0031	4279	1	0	0	1	0	0	copy fasta	SH3BGRL2	chr6	79626329	79708655
SH3BGRL2_chr6_79626329_79708655	0/0	t0032	4301	1	1	0	0	0	0	copy fasta	SH3BGRL2	chr6	79626329	79708655
SH3BGRL2_chr6_79626329_79708655	0/0	t0033	4279	1	1	0	0	0	0	copy fasta	SH3BGRL2	chr6	79626329	79708655
SH3BGRL2_chr6_79626329_79708655	0/0	t0034	4277	1	0	0	1	0	0	copy fasta	SH3BGRL2	chr6	79626329	79708655
SH3BGRL2_chr6_79626329_79708655	0/0	t0035	4277	1	1	0	0	0	0	copy fasta	SH3BGRL2	chr6	79626329	79708655
SH3BGRL2_chr6_79626329_79708655	0/0	t0036	4277	1	0	0	1	0	0	copy fasta	SH3BGRL2	chr6	79626329	79708655
SH3BGRL2_chr6_79626329_79708655	0/0	t0037	4281	1	1	0	0	0	0	copy fasta	SH3BGRL2	chr6	79626329	79708655
SH3BGRL2_chr6_79626329_79708655	0/0	t0038	4280	1	1	0	0	0	0	copy fasta	SH3BGRL2	chr6	79626329	79708655
SH3BGRL2_chr6_79626329_79708655	0/0	t0039	4280	1	1	0	0	0	0	copy fasta	SH3BGRL2	chr6	79626329	79708655
SH3BGRL2_chr6_79626329_79708655	0/0	t0040	4279	1	0	0	1	0	0	copy fasta	SH3BGRL2	chr6	79626329	79708655
SH3BGRL3_chr1_26275086_26286522	1/1	t0001	470	383	79	72	184	10	36	copy fasta	SH3BGRL3	chr1	26275086	26286522
SH3BGRL3_chr1_26275086_26286522	0/0	t0002	470	33	14	6	1	6	6	copy fasta	SH3BGRL3	chr1	26275086	26286522
SH3BGRL3_chr1_26275086_26286522	0/0	t0003	470	3	3	0	0	0	0	copy fasta	SH3BGRL3	chr1	26275086	26286522
SH3BGRL3_chr1_26275086_26286522	0/0	t0004	470	2	0	0	2	0	0	copy fasta	SH3BGRL3	chr1	26275086	26286522
SH3BGRL3_chr1_26275086_26286522	0/0	t0005	470	1	0	0	1	0	0	copy fasta	SH3BGRL3	chr1	26275086	26286522
SH3BGRL_chrX_81197102_81303547	0/1	t0001	1420	121	11	22	64	6	17	copy fasta	SH3BGRL	chrX	81197102	81303547
SH3BGRL_chrX_81197102_81303547	1/0	t0002	1420	102	45	22	24	3	7	copy fasta	SH3BGRL	chrX	81197102	81303547
SH3BGRL_chrX_81197102_81303547	0/0	t0003	1420	7	6	1	0	0	0	copy fasta	SH3BGRL	chrX	81197102	81303547
SH3BGRL_chrX_81197102_81303547	0/0	t0004	1420	3	3	0	0	0	0	copy fasta	SH3BGRL	chrX	81197102	81303547
SH3BGRL_chrX_81197102_81303547	0/0	t0005	1420	3	0	0	3	0	0	copy fasta	SH3BGRL	chrX	81197102	81303547
SH3BGRL_chrX_81197102_81303547	0/0	t0006	1420	2	2	0	0	0	0	copy fasta	SH3BGRL	chrX	81197102	81303547
SH3BGRL_chrX_81197102_81303547	0/0	t0007	1420	1	0	0	0	0	1	copy fasta	SH3BGRL	chrX	81197102	81303547
SH3BGRL_chrX_81197102_81303547	0/0	t0008	1420	1	1	0	0	0	0	copy fasta	SH3BGRL	chrX	81197102	81303547
SH3BGRL_chrX_81197102_81303547	0/0	t0009	1420	1	1	0	0	0	0	copy fasta	SH3BGRL	chrX	81197102	81303547
SH3BGRL_chrX_81197102_81303547	0/0	t0010	1420	1	0	0	0	0	1	copy fasta	SH3BGRL	chrX	81197102	81303547
SH3BGRL_chrX_81197102_81303547	0/0	t0011	1420	1	0	0	1	0	0	copy fasta	SH3BGRL	chrX	81197102	81303547
SH3BGR_chr21_39446970_39520504	0/0	t0001	579	227	41	39	99	13	35	copy fasta	SH3BGR	chr21	39446970	39520504
SH3BGR_chr21_39446970_39520504	0/1	t0002	579	37	12	12	5	3	4	copy fasta	SH3BGR	chr21	39446970	39520504
SH3BGR_chr21_39446970_39520504	0/0	t0003	578	11	11	0	0	0	0	copy fasta	SH3BGR	chr21	39446970	39520504
SH3BGR_chr21_39446970_39520504	0/0	t0004	578	8	4	3	0	0	1	copy fasta	SH3BGR	chr21	39446970	39520504
SH3BGR_chr21_39446970_39520504	0/0	t0005	579	7	7	0	0	0	0	copy fasta	SH3BGR	chr21	39446970	39520504
SH3BGR_chr21_39446970_39520504	0/0	t0006	579	5	5	0	0	0	0	copy fasta	SH3BGR	chr21	39446970	39520504
SH3BGR_chr21_39446970_39520504	1/0	t0007	579	3	0	2	0	0	0	copy fasta	SH3BGR	chr21	39446970	39520504
SH3BGR_chr21_39446970_39520504	0/0	t0008	579	1	0	0	1	0	0	copy fasta	SH3BGR	chr21	39446970	39520504
SH3BGR_chr21_39446970_39520504	0/0	t0009	579	1	0	1	0	0	0	copy fasta	SH3BGR	chr21	39446970	39520504
SH3BGR_chr21_39446970_39520504	0/0	t0010	579	1	0	0	1	0	0	copy fasta	SH3BGR	chr21	39446970	39520504
SH3BGR_chr21_39446970_39520504	0/0	t0011	579	1	0	1	0	0	0	copy fasta	SH3BGR	chr21	39446970	39520504
SH3BP1_chr22_37634669_37661117	1/0	t0001	553	200	48	42	77	11	21	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/1	t0002	553	195	34	32	104	7	17	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	t0003	553	16	14	2	0	0	0	copy fasta	SH3BP1	chr22	37634669	37661117