JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SH3BP1_chr22_37634669_37661117	0/0	t0004	553	1	0	0	1	0	0	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP2_chr4_2788085_2846096	0/0	t0001	7322	71	2	16	38	4	11	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	1/0	t0002	7321	54	9	12	22	2	8	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0003	7321	37	0	0	37	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/1	t0004	7322	18	3	5	1	4	4	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0005	7320	14	12	1	1	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0006	7321	11	11	0	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0007	7321	11	1	7	1	1	1	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0008	7322	9	0	1	7	0	1	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0009	7321	7	1	0	6	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0010	7322	6	0	6	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0011	7321	5	0	5	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0012	7322	5	1	0	0	0	4	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0013	7322	5	0	5	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0014	7320	5	4	1	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0015	7320	5	4	1	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0016	7329	5	5	0	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0017	7321	4	1	2	0	0	1	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0018	7322	3	0	3	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0019	7318	3	3	0	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0020	7323	3	0	1	0	2	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0021	7321	3	3	0	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0022	7323	2	0	1	0	0	1	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0023	7322	2	0	2	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0024	7322	2	0	0	2	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0025	7322	2	0	0	2	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0026	7322	2	0	1	0	0	1	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0027	7321	2	2	0	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0028	7320	2	0	0	2	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0029	7322	2	0	0	2	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0030	7322	2	0	0	2	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0031	7321	2	2	0	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0032	7320	2	0	0	1	1	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0033	7320	2	2	0	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0034	7320	2	0	1	0	0	1	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0035	7321	2	2	0	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0036	7334	2	2	0	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0037	7321	2	2	0	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0038	7321	2	1	0	0	0	1	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0039	7322	2	0	0	0	0	2	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0040	7328	2	2	0	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0041	7321	1	0	1	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0042	7321	1	1	0	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0043	7320	1	0	0	0	0	1	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0044	7322	1	0	0	0	0	1	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0045	7321	1	0	1	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0046	7322	1	1	0	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0047	7320	1	1	0	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0048	7307	1	0	0	1	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0049	7321	1	0	1	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096