JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SH3BP2_chr4_2788085_2846096	0/0	t0050	7322	1	1	0	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0051	7321	1	0	0	1	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0052	7320	1	0	0	1	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0053	7321	1	0	0	1	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0054	7321	1	0	0	1	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0055	7322	1	0	0	1	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0056	7322	1	1	0	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0057	7322	1	0	0	1	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0058	7323	1	0	0	1	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0059	7323	1	0	0	1	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0060	7344	1	0	0	1	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0061	7321	1	0	0	1	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0062	7320	1	1	0	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0063	7322	1	0	0	1	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0064	7323	1	0	1	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0065	7320	1	1	0	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0066	7322	1	0	0	1	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0067	7321	1	0	0	0	1	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0068	7321	1	0	0	0	0	1	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0069	7320	1	1	0	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0070	7320	1	1	0	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0071	7322	1	0	0	1	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0072	7321	1	0	0	1	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0073	7321	1	0	1	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0074	7321	1	0	1	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0075	7322	1	0	0	0	0	1	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0076	7322	1	0	1	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0077	7334	1	1	0	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0078	7319	1	1	0	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0079	7318	1	1	0	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0080	7321	1	0	0	1	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0081	7321	1	0	0	0	0	1	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0082	7321	1	0	0	1	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0083	7321	1	1	0	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0084	7321	1	0	1	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0085	7323	1	0	1	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0086	7323	1	1	0	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0087	7322	1	0	1	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0088	7321	1	0	1	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0089	7318	1	1	0	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0090	7321	1	0	0	1	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0091	7321	1	0	0	0	0	1	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0092	7321	1	0	0	0	1	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0093	7322	1	0	0	0	0	1	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0094	7321	1	0	0	0	0	1	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0095	7328	1	1	0	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	t0096	7329	1	1	0	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP4_chr2_234947017_235060714	1/1	t0001	2259	177	40	42	65	11	17	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	t0002	2259	94	16	14	47	1	16	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	t0003	2259	32	12	5	11	0	4	copy fasta	SH3BP4	chr2	234947017	235060714