JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SH3BP4_chr2_234947017_235060714	0/0	t0004	2259	14	2	1	6	2	3	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	t0005	2259	5	5	0	0	0	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	t0006	2262	4	4	0	0	0	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	t0007	2259	4	0	0	1	0	3	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	t0008	2259	2	2	0	0	0	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	t0009	2259	2	0	0	2	0	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	t0010	2259	2	1	1	0	0	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	t0011	2259	1	0	1	0	0	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	t0012	2259	1	0	0	1	0	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	t0013	2259	1	1	0	0	0	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	t0014	2259	1	0	0	0	0	1	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	t0015	2259	1	0	0	0	0	1	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	t0016	2259	1	1	0	0	0	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	t0017	2259	1	1	0	0	0	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	t0018	2259	1	1	0	0	0	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	t0019	2259	1	1	0	0	0	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	t0020	2259	1	0	0	0	0	1	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	t0021	2259	1	1	0	0	0	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	t0022	2259	1	0	0	1	0	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP5L_chr1_248805446_248830915	1/1	t0001	1967	161	5	42	77	12	23	copy fasta	SH3BP5L	chr1	248805446	248830915
SH3BP5L_chr1_248805446_248830915	0/0	t0002	1966	95	32	13	40	1	9	copy fasta	SH3BP5L	chr1	248805446	248830915
SH3BP5L_chr1_248805446_248830915	0/0	t0003	1966	85	15	3	60	2	5	copy fasta	SH3BP5L	chr1	248805446	248830915
SH3BP5L_chr1_248805446_248830915	0/0	t0004	1967	17	15	1	0	0	1	copy fasta	SH3BP5L	chr1	248805446	248830915
SH3BP5L_chr1_248805446_248830915	0/0	t0005	1966	10	0	0	10	0	0	copy fasta	SH3BP5L	chr1	248805446	248830915
SH3BP5L_chr1_248805446_248830915	0/0	t0006	1966	9	7	2	0	0	0	copy fasta	SH3BP5L	chr1	248805446	248830915
SH3BP5L_chr1_248805446_248830915	0/0	t0007	1967	8	8	0	0	0	0	copy fasta	SH3BP5L	chr1	248805446	248830915
SH3BP5L_chr1_248805446_248830915	0/0	t0008	1966	4	4	0	0	0	0	copy fasta	SH3BP5L	chr1	248805446	248830915
SH3BP5L_chr1_248805446_248830915	0/0	t0009	1967	4	1	0	3	0	0	copy fasta	SH3BP5L	chr1	248805446	248830915
SH3BP5L_chr1_248805446_248830915	0/0	t0010	1967	3	3	0	0	0	0	copy fasta	SH3BP5L	chr1	248805446	248830915
SH3BP5L_chr1_248805446_248830915	0/0	t0011	1966	2	2	0	0	0	0	copy fasta	SH3BP5L	chr1	248805446	248830915
SH3BP5L_chr1_248805446_248830915	0/0	t0012	1966	2	0	0	2	0	0	copy fasta	SH3BP5L	chr1	248805446	248830915
SH3BP5L_chr1_248805446_248830915	0/0	t0013	1967	2	0	1	0	1	0	copy fasta	SH3BP5L	chr1	248805446	248830915
SH3BP5L_chr1_248805446_248830915	0/0	t0014	1967	2	0	0	2	0	0	copy fasta	SH3BP5L	chr1	248805446	248830915
SH3BP5L_chr1_248805446_248830915	0/0	t0015	1967	2	0	0	2	0	0	copy fasta	SH3BP5L	chr1	248805446	248830915
SH3BP5L_chr1_248805446_248830915	0/0	t0016	1966	1	0	0	1	0	0	copy fasta	SH3BP5L	chr1	248805446	248830915
SH3BP5L_chr1_248805446_248830915	0/0	t0017	1966	1	0	0	1	0	0	copy fasta	SH3BP5L	chr1	248805446	248830915
SH3BP5L_chr1_248805446_248830915	0/0	t0018	1952	1	0	0	0	0	1	copy fasta	SH3BP5L	chr1	248805446	248830915
SH3BP5L_chr1_248805446_248830915	0/0	t0019	1967	1	1	0	0	0	0	copy fasta	SH3BP5L	chr1	248805446	248830915
SH3BP5L_chr1_248805446_248830915	0/0	t0020	1967	1	1	0	0	0	0	copy fasta	SH3BP5L	chr1	248805446	248830915
SH3BP5L_chr1_248805446_248830915	0/0	t0021	1967	1	0	0	0	0	1	copy fasta	SH3BP5L	chr1	248805446	248830915
SH3BP5_chr3_15249353_15337586	1/0	t0001	1912	184	30	42	78	8	25	copy fasta	SH3BP5	chr3	15249353	15337586
SH3BP5_chr3_15249353_15337586	0/0	t0002	1912	78	2	11	47	3	15	copy fasta	SH3BP5	chr3	15249353	15337586
SH3BP5_chr3_15249353_15337586	0/1	t0003	1912	54	7	17	22	1	6	copy fasta	SH3BP5	chr3	15249353	15337586
SH3BP5_chr3_15249353_15337586	0/0	t0004	1915	12	11	1	0	0	0	copy fasta	SH3BP5	chr3	15249353	15337586
SH3BP5_chr3_15249353_15337586	0/0	t0005	1916	7	7	0	0	0	0	copy fasta	SH3BP5	chr3	15249353	15337586
SH3BP5_chr3_15249353_15337586	0/0	t0006	1916	7	7	0	0	0	0	copy fasta	SH3BP5	chr3	15249353	15337586
SH3BP5_chr3_15249353_15337586	0/0	t0007	1915	6	6	0	0	0	0	copy fasta	SH3BP5	chr3	15249353	15337586
SH3BP5_chr3_15249353_15337586	0/0	t0008	1916	4	4	0	0	0	0	copy fasta	SH3BP5	chr3	15249353	15337586
SH3BP5_chr3_15249353_15337586	0/0	t0009	1912	3	3	0	0	0	0	copy fasta	SH3BP5	chr3	15249353	15337586
SH3BP5_chr3_15249353_15337586	0/0	t0010	1915	3	3	0	0	0	0	copy fasta	SH3BP5	chr3	15249353	15337586