JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SH3BP5_chr3_15249353_15337586	0/0	t0011	1915	2	2	0	0	0	0	copy fasta	SH3BP5	chr3	15249353	15337586
SH3BP5_chr3_15249353_15337586	0/0	t0012	1930	1	0	0	0	0	1	copy fasta	SH3BP5	chr3	15249353	15337586
SH3BP5_chr3_15249353_15337586	0/0	t0013	1915	1	1	0	0	0	0	copy fasta	SH3BP5	chr3	15249353	15337586
SH3BP5_chr3_15249353_15337586	0/0	t0014	1916	1	1	0	0	0	0	copy fasta	SH3BP5	chr3	15249353	15337586
SH3BP5_chr3_15249353_15337586	0/0	t0015	1915	1	1	0	0	0	0	copy fasta	SH3BP5	chr3	15249353	15337586
SH3BP5_chr3_15249353_15337586	0/0	t0016	1912	1	0	0	0	0	1	copy fasta	SH3BP5	chr3	15249353	15337586
SH3BP5_chr3_15249353_15337586	0/0	t0017	1915	1	1	0	0	0	0	copy fasta	SH3BP5	chr3	15249353	15337586
SH3BP5_chr3_15249353_15337586	0/0	t0018	1912	1	0	0	1	0	0	copy fasta	SH3BP5	chr3	15249353	15337586
SH3BP5_chr3_15249353_15337586	0/0	t0019	1915	1	1	0	0	0	0	copy fasta	SH3BP5	chr3	15249353	15337586
SH3BP5_chr3_15249353_15337586	0/0	t0020	1895	1	1	0	0	0	0	copy fasta	SH3BP5	chr3	15249353	15337586
SH3BP5_chr3_15249353_15337586	0/0	t0021	1912	1	0	1	0	0	0	copy fasta	SH3BP5	chr3	15249353	15337586
SH3BP5_chr3_15249353_15337586	0/0	t0022	1912	1	0	0	1	0	0	copy fasta	SH3BP5	chr3	15249353	15337586
SH3BP5_chr3_15249353_15337586	0/0	t0023	1915	1	1	0	0	0	0	copy fasta	SH3BP5	chr3	15249353	15337586
SH3BP5_chr3_15249353_15337586	0/0	t0024	1911	1	1	0	0	0	0	copy fasta	SH3BP5	chr3	15249353	15337586
SH3BP5_chr3_15249353_15337586	0/0	t0025	1912	1	0	0	1	0	0	copy fasta	SH3BP5	chr3	15249353	15337586
SH3BP5_chr3_15249353_15337586	0/0	t0026	1912	1	1	0	0	0	0	copy fasta	SH3BP5	chr3	15249353	15337586
SH3BP5_chr3_15249353_15337586	0/0	t0027	1916	1	1	0	0	0	0	copy fasta	SH3BP5	chr3	15249353	15337586
SH3D19_chr4_151115281_151330605	0/0	t0001	2060	190	36	33	93	7	21	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	1/1	t0002	2064	59	28	11	10	0	8	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	t0003	2059	19	18	1	0	0	0	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	t0004	2060	3	0	2	0	1	0	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	t0005	2060	2	2	0	0	0	0	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	t0006	2060	1	1	0	0	0	0	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	t0007	2060	1	0	1	0	0	0	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	t0008	2064	1	1	0	0	0	0	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	t0009	2060	1	0	0	1	0	0	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	t0010	2060	1	0	1	0	0	0	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	t0011	2060	1	0	1	0	0	0	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	t0012	2060	1	0	0	0	0	1	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	t0013	2060	1	1	0	0	0	0	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	t0014	2060	1	1	0	0	0	0	copy fasta	SH3D19	chr4	151115281	151330605
SH3D21_chr1_36301368_36326347	1/1	t0001	274	376	98	74	140	16	46	copy fasta	SH3D21	chr1	36301368	36326347
SH3GL1_chr19_4355370_4405547	1/1	t0001	1410	263	68	46	105	10	32	copy fasta	SH3GL1	chr19	4355370	4405547
SH3GL1_chr19_4355370_4405547	0/0	t0002	1410	51	1	24	11	5	10	copy fasta	SH3GL1	chr19	4355370	4405547
SH3GL1_chr19_4355370_4405547	0/0	t0003	1410	11	11	0	0	0	0	copy fasta	SH3GL1	chr19	4355370	4405547
SH3GL1_chr19_4355370_4405547	0/0	t0004	1410	5	5	0	0	0	0	copy fasta	SH3GL1	chr19	4355370	4405547
SH3GL1_chr19_4355370_4405547	0/0	t0005	1410	4	0	0	4	0	0	copy fasta	SH3GL1	chr19	4355370	4405547
SH3GL1_chr19_4355370_4405547	0/0	t0006	1410	3	0	2	0	1	0	copy fasta	SH3GL1	chr19	4355370	4405547
SH3GL1_chr19_4355370_4405547	0/0	t0007	1410	2	1	1	0	0	0	copy fasta	SH3GL1	chr19	4355370	4405547
SH3GL1_chr19_4355370_4405547	0/0	t0008	1410	2	0	0	2	0	0	copy fasta	SH3GL1	chr19	4355370	4405547
SH3GL1_chr19_4355370_4405547	0/0	t0009	1410	1	0	1	0	0	0	copy fasta	SH3GL1	chr19	4355370	4405547
SH3GL1_chr19_4355370_4405547	0/0	t0010	1410	1	0	0	1	0	0	copy fasta	SH3GL1	chr19	4355370	4405547
SH3GL1_chr19_4355370_4405547	0/0	t0011	1410	1	1	0	0	0	0	copy fasta	SH3GL1	chr19	4355370	4405547
SH3GL1_chr19_4355370_4405547	0/0	t0012	1423	1	0	0	1	0	0	copy fasta	SH3GL1	chr19	4355370	4405547
SH3GL1_chr19_4355370_4405547	0/0	t0013	1410	1	0	1	0	0	0	copy fasta	SH3GL1	chr19	4355370	4405547
SH3GL1_chr19_4355370_4405547	0/0	t0014	1410	1	0	1	0	0	0	copy fasta	SH3GL1	chr19	4355370	4405547
SH3GL1_chr19_4355370_4405547	0/0	t0015	1410	1	0	0	0	0	1	copy fasta	SH3GL1	chr19	4355370	4405547
SH3GL1_chr19_4355370_4405547	0/0	t0016	1410	1	1	0	0	0	0	copy fasta	SH3GL1	chr19	4355370	4405547
SH3GL1_chr19_4355370_4405547	0/0	t0017	1410	1	1	0	0	0	0	copy fasta	SH3GL1	chr19	4355370	4405547
SH3GL1_chr19_4355370_4405547	0/0	t0018	1410	1	0	0	0	0	1	copy fasta	SH3GL1	chr19	4355370	4405547