JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SH3GL1_chr19_4355370_4405547	0/0	t0019	1410	1	0	1	0	0	0	copy fasta	SH3GL1	chr19	4355370	4405547
SH3GL1_chr19_4355370_4405547	0/0	t0020	1410	1	0	0	1	0	0	copy fasta	SH3GL1	chr19	4355370	4405547
SH3GL1_chr19_4355370_4405547	0/0	t0021	1410	1	0	1	0	0	0	copy fasta	SH3GL1	chr19	4355370	4405547
SH3GL1_chr19_4355370_4405547	0/0	t0022	1410	1	1	0	0	0	0	copy fasta	SH3GL1	chr19	4355370	4405547
SH3GL1_chr19_4355370_4405547	0/0	t0023	1410	1	1	0	0	0	0	copy fasta	SH3GL1	chr19	4355370	4405547
SH3GL1_chr19_4355370_4405547	0/0	t0024	1410	1	0	0	1	0	0	copy fasta	SH3GL1	chr19	4355370	4405547
SH3GL1_chr19_4355370_4405547	0/0	t0025	1410	1	1	0	0	0	0	copy fasta	SH3GL1	chr19	4355370	4405547
SH3GL2_chr9_17574066_17802124	0/0	t0001	1559	142	38	18	64	8	14	copy fasta	SH3GL2	chr9	17574066	17802124
SH3GL2_chr9_17574066_17802124	0/0	t0002	1559	57	10	18	22	2	5	copy fasta	SH3GL2	chr9	17574066	17802124
SH3GL2_chr9_17574066_17802124	0/1	t0003	1559	12	1	4	0	4	2	copy fasta	SH3GL2	chr9	17574066	17802124
SH3GL2_chr9_17574066_17802124	0/0	t0004	1559	10	10	0	0	0	0	copy fasta	SH3GL2	chr9	17574066	17802124
SH3GL2_chr9_17574066_17802124	0/0	t0005	1559	10	1	1	5	0	3	copy fasta	SH3GL2	chr9	17574066	17802124
SH3GL2_chr9_17574066_17802124	0/0	t0006	1559	6	3	3	0	0	0	copy fasta	SH3GL2	chr9	17574066	17802124
SH3GL2_chr9_17574066_17802124	0/0	t0007	1590	4	0	0	0	0	4	copy fasta	SH3GL2	chr9	17574066	17802124
SH3GL2_chr9_17574066_17802124	0/0	t0008	1559	3	3	0	0	0	0	copy fasta	SH3GL2	chr9	17574066	17802124
SH3GL2_chr9_17574066_17802124	0/0	t0009	1559	2	2	0	0	0	0	copy fasta	SH3GL2	chr9	17574066	17802124
SH3GL2_chr9_17574066_17802124	0/0	t0010	1559	2	2	0	0	0	0	copy fasta	SH3GL2	chr9	17574066	17802124
SH3GL2_chr9_17574066_17802124	0/0	t0011	1559	2	1	1	0	0	0	copy fasta	SH3GL2	chr9	17574066	17802124
SH3GL2_chr9_17574066_17802124	1/0	t0012	1559	1	0	0	0	0	0	copy fasta	SH3GL2	chr9	17574066	17802124
SH3GL2_chr9_17574066_17802124	0/0	t0013	1559	1	1	0	0	0	0	copy fasta	SH3GL2	chr9	17574066	17802124
SH3GL2_chr9_17574066_17802124	0/0	t0014	1559	1	0	0	1	0	0	copy fasta	SH3GL2	chr9	17574066	17802124
SH3GL2_chr9_17574066_17802124	0/0	t0015	1559	1	0	0	1	0	0	copy fasta	SH3GL2	chr9	17574066	17802124
SH3GL2_chr9_17574066_17802124	0/0	t0016	1559	1	0	0	1	0	0	copy fasta	SH3GL2	chr9	17574066	17802124
SH3GL2_chr9_17574066_17802124	0/0	t0017	1577	1	0	1	0	0	0	copy fasta	SH3GL2	chr9	17574066	17802124
SH3GL2_chr9_17574066_17802124	0/0	t0018	1559	1	1	0	0	0	0	copy fasta	SH3GL2	chr9	17574066	17802124
SH3GL2_chr9_17574066_17802124	0/0	t0019	1559	1	1	0	0	0	0	copy fasta	SH3GL2	chr9	17574066	17802124
SH3GL2_chr9_17574066_17802124	0/0	t0020	1559	1	1	0	0	0	0	copy fasta	SH3GL2	chr9	17574066	17802124
SH3GL2_chr9_17574066_17802124	0/0	t0021	1559	1	1	0	0	0	0	copy fasta	SH3GL2	chr9	17574066	17802124
SH3GL3_chr15_83442341_83623743	0/1	t0001	653	170	48	34	62	10	15	copy fasta	SH3GL3	chr15	83442341	83623743
SH3GL3_chr15_83442341_83623743	0/0	t0002	653	78	33	8	30	0	7	copy fasta	SH3GL3	chr15	83442341	83623743
SH3GL3_chr15_83442341_83623743	1/0	t0003	650	71	3	14	43	4	6	copy fasta	SH3GL3	chr15	83442341	83623743
SH3GL3_chr15_83442341_83623743	0/0	t0004	653	3	0	0	3	0	0	copy fasta	SH3GL3	chr15	83442341	83623743
SH3GL3_chr15_83442341_83623743	0/0	t0005	653	1	1	0	0	0	0	copy fasta	SH3GL3	chr15	83442341	83623743
SH3GL3_chr15_83442341_83623743	0/0	t0006	653	1	1	0	0	0	0	copy fasta	SH3GL3	chr15	83442341	83623743
SH3GLB1_chr1_86699576_86753184	1/0	t0001	5274	143	17	26	71	5	23	copy fasta	SH3GLB1	chr1	86699576	86753184
SH3GLB1_chr1_86699576_86753184	0/0	t0002	5273	27	6	2	16	1	2	copy fasta	SH3GLB1	chr1	86699576	86753184
SH3GLB1_chr1_86699576_86753184	0/0	t0003	5273	24	0	12	12	0	0	copy fasta	SH3GLB1	chr1	86699576	86753184
SH3GLB1_chr1_86699576_86753184	0/1	t0004	5273	15	1	2	6	2	3	copy fasta	SH3GLB1	chr1	86699576	86753184
SH3GLB1_chr1_86699576_86753184	0/0	t0005	5273	15	8	5	2	0	0	copy fasta	SH3GLB1	chr1	86699576	86753184
SH3GLB1_chr1_86699576_86753184	0/0	t0006	5273	10	10	0	0	0	0	copy fasta	SH3GLB1	chr1	86699576	86753184
SH3GLB1_chr1_86699576_86753184	0/0	t0007	5273	8	8	0	0	0	0	copy fasta	SH3GLB1	chr1	86699576	86753184
SH3GLB1_chr1_86699576_86753184	0/0	t0008	5274	7	6	1	0	0	0	copy fasta	SH3GLB1	chr1	86699576	86753184
SH3GLB1_chr1_86699576_86753184	0/0	t0009	5273	6	6	0	0	0	0	copy fasta	SH3GLB1	chr1	86699576	86753184
SH3GLB1_chr1_86699576_86753184	0/0	t0010	5273	6	5	0	0	0	1	copy fasta	SH3GLB1	chr1	86699576	86753184
SH3GLB1_chr1_86699576_86753184	0/0	t0011	5274	6	0	0	6	0	0	copy fasta	SH3GLB1	chr1	86699576	86753184
SH3GLB1_chr1_86699576_86753184	0/0	t0012	5274	6	0	4	0	2	0	copy fasta	SH3GLB1	chr1	86699576	86753184
SH3GLB1_chr1_86699576_86753184	0/0	t0013	5273	4	2	2	0	0	0	copy fasta	SH3GLB1	chr1	86699576	86753184
SH3GLB1_chr1_86699576_86753184	0/0	t0014	5271	3	3	0	0	0	0	copy fasta	SH3GLB1	chr1	86699576	86753184
SH3GLB1_chr1_86699576_86753184	0/0	t0015	5274	3	0	0	0	0	3	copy fasta	SH3GLB1	chr1	86699576	86753184
SH3GLB1_chr1_86699576_86753184	0/0	t0016	5273	3	1	0	0	0	2	copy fasta	SH3GLB1	chr1	86699576	86753184