Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BCAS1_chr20_53938541_54075594	0/0	t0042	1548	1	0	1	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0043	1548	1	1	0	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0044	1549	1	0	0	1	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0045	1549	1	0	0	0	1	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0046	1548	1	0	0	0	0	1	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0047	1547	1	0	0	0	0	1	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0048	1547	1	0	0	1	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0049	1546	1	0	0	1	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0050	1546	1	0	0	1	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0051	1545	1	0	0	1	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0052	1547	1	0	0	1	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0053	1546	1	0	0	1	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0054	1549	1	1	0	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0055	1549	1	0	0	0	0	1	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0056	1549	1	0	0	1	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0057	1549	1	0	1	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0058	1549	1	0	1	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0059	1548	1	1	0	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0060	1547	1	0	1	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0061	1548	1	1	0	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0062	1548	1	1	0	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0063	1546	1	0	0	0	0	1	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0064	1546	1	0	0	1	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0065	1546	1	0	0	1	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0066	1546	1	0	0	0	0	1	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0067	1548	1	1	0	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS1_chr20_53938541_54075594	0/0	t0068	1546	1	1	0	0	0	0	copy fasta	BCAS1	chr20	53938541	54075594
BCAS2_chr1_114562557_114586615	1/0	t0001	598	237	52	39	104	12	29	copy fasta	BCAS2	chr1	114562557	114586615
BCAS2_chr1_114562557_114586615	0/1	t0002	598	170	35	39	74	4	17	copy fasta	BCAS2	chr1	114562557	114586615
BCAS2_chr1_114562557_114586615	0/0	t0003	598	5	5	0	0	0	0	copy fasta	BCAS2	chr1	114562557	114586615
BCAS2_chr1_114562557_114586615	0/0	t0004	598	1	1	0	0	0	0	copy fasta	BCAS2	chr1	114562557	114586615
BCAS2_chr1_114562557_114586615	0/0	t0005	598	1	1	0	0	0	0	copy fasta	BCAS2	chr1	114562557	114586615
BCAS3_chr17_60672851_61397831	0/0	t0001	776	50	42	4	4	0	0	copy fasta	BCAS3	chr17	60672851	61397831
BCAS3_chr17_60672851_61397831	0/0	t0002	776	23	19	4	0	0	0	copy fasta	BCAS3	chr17	60672851	61397831
BCAS3_chr17_60672851_61397831	0/0	t0003	776	1	1	0	0	0	0	copy fasta	BCAS3	chr17	60672851	61397831
BCAS4_chr20_50790061_50882177	1/1	t0001	593	112	20	33	36	4	17	copy fasta	BCAS4	chr20	50790061	50882177
BCAS4_chr20_50790061_50882177	0/0	t0002	593	95	34	12	36	2	11	copy fasta	BCAS4	chr20	50790061	50882177
BCAS4_chr20_50790061_50882177	0/0	t0003	593	29	12	9	8	0	0	copy fasta	BCAS4	chr20	50790061	50882177
BCAS4_chr20_50790061_50882177	0/0	t0004	593	16	7	2	6	0	1	copy fasta	BCAS4	chr20	50790061	50882177
BCAS4_chr20_50790061_50882177	0/0	t0005	593	9	6	3	0	0	0	copy fasta	BCAS4	chr20	50790061	50882177
BCAS4_chr20_50790061_50882177	0/0	t0006	593	4	3	1	0	0	0	copy fasta	BCAS4	chr20	50790061	50882177
BCAS4_chr20_50790061_50882177	0/0	t0007	593	2	0	2	0	0	0	copy fasta	BCAS4	chr20	50790061	50882177
BCAS4_chr20_50790061_50882177	0/0	t0008	593	1	0	0	0	0	1	copy fasta	BCAS4	chr20	50790061	50882177
BCAS4_chr20_50790061_50882177	0/0	t0009	593	1	1	0	0	0	0	copy fasta	BCAS4	chr20	50790061	50882177
BCAS4_chr20_50790061_50882177	0/0	t0010	593	1	1	0	0	0	0	copy fasta	BCAS4	chr20	50790061	50882177
BCAT1_chr12_24805024_24954101	0/0	t0001	8154	36	0	4	26	1	5	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0002	8156	26	7	11	3	2	3	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0003	8155	15	3	4	5	1	2	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0004	8156	9	0	0	9	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0005	8154	8	0	0	8	0	0	copy fasta	BCAT1	chr12	24805024	24954101