JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SH3GLB1_chr1_86699576_86753184	0/0	t0017	5273	2	2	0	0	0	0	copy fasta	SH3GLB1	chr1	86699576	86753184
SH3GLB1_chr1_86699576_86753184	0/0	t0018	5273	2	2	0	0	0	0	copy fasta	SH3GLB1	chr1	86699576	86753184
SH3GLB1_chr1_86699576_86753184	0/0	t0019	5273	2	0	0	2	0	0	copy fasta	SH3GLB1	chr1	86699576	86753184
SH3GLB1_chr1_86699576_86753184	0/0	t0020	5271	2	2	0	0	0	0	copy fasta	SH3GLB1	chr1	86699576	86753184
SH3GLB1_chr1_86699576_86753184	0/0	t0021	5274	2	0	0	0	0	2	copy fasta	SH3GLB1	chr1	86699576	86753184
SH3GLB1_chr1_86699576_86753184	0/0	t0022	5273	2	2	0	0	0	0	copy fasta	SH3GLB1	chr1	86699576	86753184
SH3GLB1_chr1_86699576_86753184	0/0	t0023	5273	2	2	0	0	0	0	copy fasta	SH3GLB1	chr1	86699576	86753184
SH3GLB1_chr1_86699576_86753184	0/0	t0024	5274	2	2	0	0	0	0	copy fasta	SH3GLB1	chr1	86699576	86753184
SH3GLB1_chr1_86699576_86753184	0/0	t0025	5273	2	2	0	0	0	0	copy fasta	SH3GLB1	chr1	86699576	86753184
SH3GLB1_chr1_86699576_86753184	0/0	t0026	5273	1	0	0	0	0	1	copy fasta	SH3GLB1	chr1	86699576	86753184
SH3GLB1_chr1_86699576_86753184	0/0	t0027	5273	1	0	0	1	0	0	copy fasta	SH3GLB1	chr1	86699576	86753184
SH3GLB1_chr1_86699576_86753184	0/0	t0028	5273	1	1	0	0	0	0	copy fasta	SH3GLB1	chr1	86699576	86753184
SH3GLB1_chr1_86699576_86753184	0/0	t0029	5273	1	0	1	0	0	0	copy fasta	SH3GLB1	chr1	86699576	86753184
SH3GLB1_chr1_86699576_86753184	0/0	t0030	5273	1	0	0	1	0	0	copy fasta	SH3GLB1	chr1	86699576	86753184
SH3GLB1_chr1_86699576_86753184	0/0	t0031	5273	1	1	0	0	0	0	copy fasta	SH3GLB1	chr1	86699576	86753184
SH3GLB1_chr1_86699576_86753184	0/0	t0032	5273	1	0	0	0	0	1	copy fasta	SH3GLB1	chr1	86699576	86753184
SH3GLB1_chr1_86699576_86753184	0/0	t0033	5274	1	0	0	1	0	0	copy fasta	SH3GLB1	chr1	86699576	86753184
SH3GLB1_chr1_86699576_86753184	0/0	t0034	5274	1	0	1	0	0	0	copy fasta	SH3GLB1	chr1	86699576	86753184
SH3GLB1_chr1_86699576_86753184	0/0	t0035	5274	1	0	1	0	0	0	copy fasta	SH3GLB1	chr1	86699576	86753184
SH3GLB1_chr1_86699576_86753184	0/0	t0036	5274	1	0	0	1	0	0	copy fasta	SH3GLB1	chr1	86699576	86753184
SH3GLB1_chr1_86699576_86753184	0/0	t0037	5274	1	0	1	0	0	0	copy fasta	SH3GLB1	chr1	86699576	86753184
SH3GLB1_chr1_86699576_86753184	0/0	t0038	5274	1	0	0	1	0	0	copy fasta	SH3GLB1	chr1	86699576	86753184
SH3GLB1_chr1_86699576_86753184	0/0	t0039	5274	1	1	0	0	0	0	copy fasta	SH3GLB1	chr1	86699576	86753184
SH3GLB2_chr9_129002036_129033331	1/0	t0001	1826	219	54	33	100	7	24	copy fasta	SH3GLB2	chr9	129002036	129033331
SH3GLB2_chr9_129002036_129033331	0/1	t0002	1826	84	12	27	26	6	12	copy fasta	SH3GLB2	chr9	129002036	129033331
SH3GLB2_chr9_129002036_129033331	0/0	t0003	1834	63	9	5	41	1	7	copy fasta	SH3GLB2	chr9	129002036	129033331
SH3GLB2_chr9_129002036_129033331	0/0	t0004	1826	13	0	0	11	0	2	copy fasta	SH3GLB2	chr9	129002036	129033331
SH3GLB2_chr9_129002036_129033331	0/0	t0005	1826	10	0	0	10	0	0	copy fasta	SH3GLB2	chr9	129002036	129033331
SH3GLB2_chr9_129002036_129033331	0/0	t0006	1826	6	0	6	0	0	0	copy fasta	SH3GLB2	chr9	129002036	129033331
SH3GLB2_chr9_129002036_129033331	0/0	t0007	1834	5	4	1	0	0	0	copy fasta	SH3GLB2	chr9	129002036	129033331
SH3GLB2_chr9_129002036_129033331	0/0	t0008	1834	4	4	0	0	0	0	copy fasta	SH3GLB2	chr9	129002036	129033331
SH3GLB2_chr9_129002036_129033331	0/0	t0009	1821	4	4	0	0	0	0	copy fasta	SH3GLB2	chr9	129002036	129033331
SH3GLB2_chr9_129002036_129033331	0/0	t0010	1826	3	3	0	0	0	0	copy fasta	SH3GLB2	chr9	129002036	129033331
SH3GLB2_chr9_129002036_129033331	0/0	t0011	1848	3	0	1	0	2	0	copy fasta	SH3GLB2	chr9	129002036	129033331
SH3GLB2_chr9_129002036_129033331	0/0	t0012	1826	2	0	0	0	0	2	copy fasta	SH3GLB2	chr9	129002036	129033331
SH3GLB2_chr9_129002036_129033331	0/0	t0013	1826	2	0	0	2	0	0	copy fasta	SH3GLB2	chr9	129002036	129033331
SH3GLB2_chr9_129002036_129033331	0/0	t0014	1834	1	0	0	1	0	0	copy fasta	SH3GLB2	chr9	129002036	129033331
SH3GLB2_chr9_129002036_129033331	0/0	t0015	1826	1	0	0	1	0	0	copy fasta	SH3GLB2	chr9	129002036	129033331
SH3GLB2_chr9_129002036_129033331	0/0	t0016	1826	1	0	1	0	0	0	copy fasta	SH3GLB2	chr9	129002036	129033331
SH3GLB2_chr9_129002036_129033331	0/0	t0017	1826	1	0	1	0	0	0	copy fasta	SH3GLB2	chr9	129002036	129033331
SH3GLB2_chr9_129002036_129033331	0/0	t0018	1826	1	0	0	1	0	0	copy fasta	SH3GLB2	chr9	129002036	129033331
SH3GLB2_chr9_129002036_129033331	0/0	t0019	1826	1	1	0	0	0	0	copy fasta	SH3GLB2	chr9	129002036	129033331
SH3GLB2_chr9_129002036_129033331	0/0	t0020	1826	1	0	0	1	0	0	copy fasta	SH3GLB2	chr9	129002036	129033331
SH3GLB2_chr9_129002036_129033331	0/0	t0021	1826	1	0	0	1	0	0	copy fasta	SH3GLB2	chr9	129002036	129033331
SH3GLB2_chr9_129002036_129033331	0/0	t0022	1826	1	0	1	0	0	0	copy fasta	SH3GLB2	chr9	129002036	129033331
SH3GLB2_chr9_129002036_129033331	0/0	t0023	1826	1	0	0	0	0	1	copy fasta	SH3GLB2	chr9	129002036	129033331
SH3GLB2_chr9_129002036_129033331	0/0	t0024	1826	1	1	0	0	0	0	copy fasta	SH3GLB2	chr9	129002036	129033331
SH3GLB2_chr9_129002036_129033331	0/0	t0025	1826	1	0	0	1	0	0	copy fasta	SH3GLB2	chr9	129002036	129033331
SH3GLB2_chr9_129002036_129033331	0/0	t0026	1826	1	1	0	0	0	0	copy fasta	SH3GLB2	chr9	129002036	129033331
SH3GLB2_chr9_129002036_129033331	0/0	t0027	1834	1	1	0	0	0	0	copy fasta	SH3GLB2	chr9	129002036	129033331