JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SH3PXD2A_chr10_103589027_103860576	0/0	t0084	8106	1	1	0	0	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	t0085	8100	1	0	0	1	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	t0086	8100	1	0	0	1	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	t0087	8122	1	0	0	1	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	t0088	8104	1	1	0	0	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	t0089	8106	1	1	0	0	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	t0090	8112	1	1	0	0	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	t0091	8103	1	1	0	0	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	t0092	8101	1	1	0	0	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	t0093	8118	1	1	0	0	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	t0094	8126	1	0	0	1	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	t0095	8099	1	0	0	0	0	1	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	t0096	8101	1	0	1	0	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	t0097	8103	1	0	0	1	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	t0098	8122	1	0	0	1	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	t0099	8099	1	0	0	1	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	t0100	8118	1	0	0	0	0	1	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	t0101	8122	1	0	1	0	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	t0102	8103	1	1	0	0	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	t0103	8105	1	0	1	0	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	t0104	8105	1	1	0	0	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	t0105	8116	1	0	1	0	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	t0106	8099	1	1	0	0	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	t0107	8114	1	1	0	0	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	t0108	8126	1	1	0	0	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	t0109	8112	1	1	0	0	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	t0110	8122	1	1	0	0	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	t0111	8126	1	1	0	0	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	t0112	8106	1	1	0	0	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	t0113	8100	1	1	0	0	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	t0114	8124	1	0	1	0	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	t0115	8122	1	0	0	1	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	t0116	8104	1	0	1	0	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	t0117	8124	1	0	1	0	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	t0118	8120	1	0	0	0	0	1	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	t0119	8102	1	0	0	0	1	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	t0120	8122	1	0	0	0	0	1	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	t0121	8118	1	0	1	0	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	t0122	8120	1	0	0	0	0	1	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	t0123	8114	1	0	1	0	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	t0124	8120	1	1	0	0	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	t0125	8115	1	1	0	0	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	t0126	8117	1	1	0	0	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	t0127	8122	1	0	1	0	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	1/0	t0128	8100	1	0	0	0	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2A_chr10_103589027_103860576	0/0	t0129	8104	1	1	0	0	0	0	copy fasta	SH3PXD2A	chr10	103589027	103860576
SH3PXD2B_chr5_172328499_172459525	0/0	t0001	5046	51	3	10	16	3	19	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	1/1	t0002	5044	32	4	7	14	2	3	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0003	5044	18	0	6	10	1	1	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0004	5046	14	2	1	8	0	3	copy fasta	SH3PXD2B	chr5	172328499	172459525