JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SH3PXD2B_chr5_172328499_172459525	0/0	t0055	5045	1	1	0	0	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0056	5044	1	0	0	0	0	1	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0057	5044	1	0	0	0	1	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0058	5046	1	0	0	0	0	1	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0059	5046	1	0	0	1	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0060	5043	1	0	0	1	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0061	5045	1	0	0	0	1	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0062	5043	1	0	0	0	0	1	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0063	5044	1	0	0	1	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0064	5044	1	0	0	1	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0065	5043	1	1	0	0	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0066	5044	1	0	0	1	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0067	5045	1	1	0	0	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0068	5046	1	1	0	0	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0069	5044	1	0	1	0	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0070	5043	1	0	0	1	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0071	5046	1	1	0	0	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0072	5046	1	1	0	0	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0073	5046	1	1	0	0	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0074	5044	1	1	0	0	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0075	5057	1	1	0	0	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0076	5044	1	1	0	0	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0077	5043	1	1	0	0	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0078	5046	1	1	0	0	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0079	5045	1	1	0	0	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0080	5044	1	1	0	0	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0081	5043	1	1	0	0	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0082	5043	1	1	0	0	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0083	5044	1	1	0	0	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0084	5047	1	0	0	1	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0085	5046	1	0	0	0	0	1	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0086	5046	1	0	0	1	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0087	5046	1	0	1	0	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0088	5047	1	0	0	1	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0089	5046	1	1	0	0	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0090	5044	1	0	0	0	1	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0091	5047	1	0	0	1	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0092	5043	1	0	0	1	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0093	5044	1	0	1	0	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0094	5044	1	1	0	0	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0095	5046	1	0	1	0	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0096	5044	1	0	1	0	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0097	5043	1	0	1	0	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3PXD2B_chr5_172328499_172459525	0/0	t0098	5056	1	0	1	0	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3RF1_chr4_169089259_169275956	0/0	t0001	2456	59	5	9	24	6	15	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	t0002	2455	39	15	5	17	1	1	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	t0003	2455	32	22	0	8	0	2	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	t0004	2455	22	2	4	6	2	8	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	1/0	t0005	2454	16	14	1	0	0	0	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/1	t0006	2455	5	0	1	3	0	0	copy fasta	SH3RF1	chr4	169089259	169275956