JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SH3RF1_chr4_169089259_169275956	0/0	t0007	2455	5	5	0	0	0	0	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	t0008	2456	4	0	3	0	0	1	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	t0009	2455	3	3	0	0	0	0	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	t0010	2456	3	3	0	0	0	0	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	t0011	2455	3	3	0	0	0	0	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	t0012	2455	3	2	1	0	0	0	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	t0013	2454	3	3	0	0	0	0	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	t0014	2455	2	0	0	0	0	2	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	t0015	2454	2	1	1	0	0	0	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	t0016	2456	1	0	0	0	0	1	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	t0017	2455	1	0	0	0	1	0	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	t0018	2443	1	1	0	0	0	0	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	t0019	2443	1	0	0	0	0	1	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	t0020	2455	1	1	0	0	0	0	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	t0021	2455	1	1	0	0	0	0	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	t0022	2455	1	1	0	0	0	0	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	t0023	2455	1	0	1	0	0	0	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	t0024	2455	1	0	0	0	1	0	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	t0025	2454	1	1	0	0	0	0	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	t0026	2454	1	1	0	0	0	0	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	t0027	2456	1	0	0	0	1	0	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	t0028	2455	1	0	0	0	0	1	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	t0029	2456	1	1	0	0	0	0	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	t0030	2456	1	1	0	0	0	0	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF2_chr5_145931578_146068292	1/0	t0001	815	187	64	32	64	8	18	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/1	t0002	815	80	8	19	40	4	8	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	t0003	815	1	0	1	0	0	0	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	t0004	815	1	0	1	0	0	0	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	t0005	815	1	0	0	0	0	1	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	t0006	815	1	0	1	0	0	0	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	t0007	815	1	0	0	0	0	1	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF3_chr2_109124205_109509634	0/0	t0001	3281	25	3	11	6	0	5	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0002	3281	21	3	8	9	0	1	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0003	3281	14	7	2	3	0	2	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0004	3277	7	0	3	0	0	4	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0005	3281	7	3	1	2	0	1	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0006	3281	6	0	4	1	0	1	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0007	3300	5	4	0	1	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0008	3281	5	0	0	5	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0009	3300	3	1	0	1	0	1	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0010	3281	3	3	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0011	3281	3	0	0	3	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0012	3300	2	2	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0013	3281	2	0	0	2	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0014	3280	2	2	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0015	3277	2	1	0	1	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0016	3281	2	2	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0017	3281	2	2	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0018	3281	2	2	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0019	3281	2	2	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634