JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SH3RF3_chr2_109124205_109509634	0/0	t0020	3281	2	2	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0021	3281	2	0	2	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0022	3296	1	1	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0023	3300	1	1	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0024	3300	1	0	1	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0025	3300	1	1	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0026	3281	1	1	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0027	3281	1	1	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0028	3281	1	1	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0029	3281	1	1	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0030	3281	1	0	0	1	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0031	3281	1	0	0	0	1	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0032	3281	1	1	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0033	3281	1	0	0	1	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0034	3281	1	0	0	0	0	1	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0035	3277	1	0	0	0	0	1	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0036	3281	1	1	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0037	3281	1	1	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0038	3281	1	0	0	1	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0039	3277	1	1	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0040	3281	1	1	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0041	3281	1	0	1	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0042	3281	1	1	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0043	3281	1	1	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0044	3281	1	1	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0045	3281	1	1	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0046	3281	1	0	0	0	0	1	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0047	3281	1	0	1	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0048	3281	1	0	0	1	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0049	3281	1	1	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0050	3281	1	1	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0051	3281	1	1	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0052	3281	1	1	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0053	3281	1	0	0	1	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0054	3281	1	0	1	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0055	3281	1	0	0	0	1	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0056	3277	1	1	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0057	3277	1	0	0	0	0	1	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0058	3281	1	0	0	0	0	1	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0059	3281	1	1	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0060	3281	1	1	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0061	3281	1	1	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0062	3277	1	1	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0063	3281	1	0	1	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0064	3281	1	1	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0065	3281	1	1	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0066	3281	1	1	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0067	3281	1	1	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0068	3281	1	1	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0069	3281	1	1	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634