JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SH3RF3_chr2_109124205_109509634	0/0	t0070	3281	1	0	0	1	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0071	3277	1	0	0	1	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0072	3281	1	0	0	1	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0073	3277	1	0	0	0	0	1	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	t0074	3277	1	0	0	0	0	1	copy fasta	SH3RF3	chr2	109124205	109509634
SH3TC1_chr4_8194290_8246103	1/0	t0001	293	277	84	62	93	7	30	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/1	t0002	293	83	4	14	40	11	13	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	t0003	294	10	6	2	1	0	1	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	t0004	293	2	2	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	t0005	294	1	0	0	1	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	t0006	293	1	0	0	1	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC2_chr5_148977150_149068062	0/0	t0001	22594	10	1	5	1	0	3	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0002	22599	10	1	0	7	0	2	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0003	22578	9	0	3	6	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0004	22600	9	1	1	7	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0005	22580	7	0	0	7	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0006	22600	6	0	0	6	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0007	22602	5	4	1	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0008	22579	4	0	0	4	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0009	22598	4	3	1	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0010	22604	4	0	3	0	0	1	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0011	22590	4	0	1	1	1	1	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0012	22590	4	0	0	4	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0013	22579	3	0	1	2	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0014	22599	3	0	2	0	1	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0015	22603	3	0	2	0	0	1	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0016	22597	3	1	1	0	1	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0017	22601	3	3	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0018	22603	3	0	3	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0019	22596	3	0	3	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0020	22596	3	0	0	3	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0021	22603	3	0	2	0	0	1	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0022	22585	3	1	2	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0023	22585	3	3	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0024	22608	2	0	2	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0025	22582	2	0	0	2	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0026	22597	2	0	0	2	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0027	22586	2	2	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0028	22603	2	2	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0029	22601	2	0	1	0	1	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0030	22597	2	2	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0031	22593	2	2	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0032	22599	2	1	1	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0033	22599	2	2	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0034	22601	2	2	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0035	22600	2	0	0	2	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0036	22603	2	0	0	2	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0037	22599	2	0	2	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0038	22603	2	0	0	2	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0039	22598	2	0	0	2	0	0	copy fasta	SH3TC2	chr5	148977150	149068062