JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SH3TC2_chr5_148977150_149068062	0/0	t0040	22597	2	0	0	2	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0041	22595	2	0	2	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0042	22598	2	0	0	2	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0043	22597	2	1	0	0	1	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0044	22606	2	0	1	0	1	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0045	22583	2	2	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0046	22600	2	0	0	2	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0047	22611	2	0	0	2	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0048	22609	2	0	0	2	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0049	22601	2	0	1	1	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0050	22592	1	0	0	1	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0051	22598	1	0	0	1	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0052	22598	1	0	0	1	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0053	22598	1	0	0	1	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0054	22603	1	0	1	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0055	22576	1	0	0	0	0	1	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0056	22611	1	0	0	0	0	1	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0057	22603	1	0	0	0	1	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0058	22601	1	0	1	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0059	22601	1	0	1	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0060	22597	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0061	22600	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0062	22598	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0063	22594	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0064	22591	1	0	0	1	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0065	22582	1	0	0	1	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0066	22580	1	0	1	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0067	22576	1	0	0	1	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0068	22574	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0069	22613	1	0	0	1	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0070	22603	1	0	0	1	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0071	22597	1	0	0	0	1	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0072	22603	1	0	0	0	1	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0073	22578	1	0	0	1	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0074	22582	1	0	0	1	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0075	22578	1	0	0	1	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0076	22577	1	0	0	1	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0077	22602	1	0	1	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0078	22603	1	0	0	1	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0079	22602	1	0	0	1	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0080	22599	1	0	1	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0081	22590	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0082	22625	1	0	1	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0083	22575	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0084	22584	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0085	22596	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0086	22592	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0087	22605	1	0	1	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0088	22606	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0089	22597	1	0	1	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062