Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BCAT1_chr12_24805024_24954101	0/0	t0006	8155	8	0	6	0	0	2	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0007	8155	7	1	2	4	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0008	8155	6	6	0	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0009	8156	6	5	1	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0010	8154	6	0	2	4	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/1	t0011	8151	5	1	3	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0012	8155	5	1	0	4	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0013	8157	4	4	0	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0014	8156	4	0	1	2	1	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0015	8155	4	0	4	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0016	8155	4	4	0	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0017	8155	4	0	0	3	0	1	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0018	8155	4	0	1	0	2	1	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0019	8155	3	0	0	0	0	3	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0020	8150	3	2	1	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0021	8155	3	3	0	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0022	8156	3	0	0	3	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0023	8155	3	0	0	2	0	1	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0024	8156	3	0	0	3	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0025	8155	3	0	1	1	0	1	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0026	8157	3	2	1	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0027	8155	3	0	1	1	0	1	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0028	8155	3	2	0	0	1	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0029	8156	3	0	0	3	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0030	8153	2	2	0	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0031	8155	2	0	1	0	0	1	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0032	8155	2	0	0	2	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0033	8155	2	0	2	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0034	8154	2	0	2	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0035	8154	2	2	0	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0036	8157	2	0	0	2	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0037	8156	2	2	0	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0038	8156	2	1	0	1	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0039	8156	2	0	0	2	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0040	8156	2	0	0	2	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0041	8155	2	1	0	0	0	1	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0042	8156	2	2	0	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0043	8156	2	2	0	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0044	8155	2	0	0	2	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0045	8155	2	0	0	2	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0046	8154	2	0	0	2	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0047	8154	2	0	0	2	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0048	8156	2	0	0	2	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0049	8156	2	0	1	1	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0050	8155	2	0	2	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0051	8154	2	0	0	2	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0052	8155	1	0	0	0	0	1	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0053	8154	1	1	0	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0054	8153	1	0	1	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0055	8155	1	1	0	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101