JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SH3TC2_chr5_148977150_149068062	0/0	t0090	22601	1	0	0	1	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0091	22600	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0092	22601	1	0	1	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0093	22595	1	0	1	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0094	22598	1	0	0	1	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0095	22592	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0096	22593	1	0	0	0	0	1	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0097	22606	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0098	22614	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0099	22597	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0100	22602	1	0	1	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0101	22604	1	0	1	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0102	22600	1	0	0	0	1	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0103	22596	1	0	0	0	0	1	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0104	22605	1	0	0	1	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0105	22608	1	0	1	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0106	22605	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0107	22603	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0108	22607	1	0	0	0	0	1	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0109	22605	1	0	0	0	0	1	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0110	22604	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0111	22605	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0112	22603	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0113	22605	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0114	22603	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0115	22599	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0116	22599	1	0	0	0	0	1	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0117	22595	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0118	22601	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0119	22597	1	0	1	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0120	22595	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0121	22589	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0122	22589	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0123	22591	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0124	22604	1	0	0	0	1	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0125	22598	1	0	0	0	0	1	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0126	22610	1	0	0	0	0	1	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0127	22572	1	0	1	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0128	22594	1	0	0	1	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0129	22594	1	0	0	1	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0130	22573	1	0	1	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0131	22598	1	0	0	1	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0132	22598	1	0	1	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0133	22590	1	0	1	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0134	22592	1	0	0	1	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0135	22591	1	0	0	0	0	1	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0136	22594	1	0	0	0	0	1	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0137	22576	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0138	22603	1	0	0	1	0	0	copy fasta	SH3TC2	chr5	148977150	149068062
SH3TC2_chr5_148977150_149068062	0/0	t0139	22592	1	1	0	0	0	0	copy fasta	SH3TC2	chr5	148977150	149068062