JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SHANK1_chr19_50654255_50724802	0/0	t0068	3169	1	0	1	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	t0069	3153	1	0	0	1	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	t0070	3154	1	1	0	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	t0071	3152	1	1	0	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	t0072	3167	1	1	0	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	t0073	3150	1	0	1	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	t0074	3149	1	1	0	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	t0075	3150	1	1	0	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	t0076	3150	1	1	0	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	t0077	3150	1	1	0	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	t0078	3169	1	0	0	1	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	t0079	3152	1	0	0	0	0	1	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	t0080	3152	1	1	0	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	t0081	3152	1	1	0	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	t0082	3153	1	1	0	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	t0083	3150	1	0	1	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	t0084	3151	1	0	0	0	0	1	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	t0085	3152	1	0	0	1	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	t0086	3151	1	1	0	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/1	t0087	3152	1	0	0	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	t0088	3153	1	0	1	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	t0089	3153	1	0	0	1	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	t0090	3153	1	1	0	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	t0091	3154	1	0	0	1	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	t0092	3155	1	0	0	0	0	1	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	t0093	3155	1	0	0	1	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	t0094	3155	1	1	0	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	t0095	3149	1	0	1	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	t0096	3152	1	1	0	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	t0097	3154	1	0	0	1	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	t0098	3154	1	0	0	1	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	t0099	3147	1	1	0	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	t0100	3168	1	0	0	0	0	1	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	t0101	3169	1	1	0	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	t0102	3153	1	1	0	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	t0103	3154	1	0	0	0	0	1	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	t0104	3168	1	0	0	0	1	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	t0105	3153	1	0	0	0	0	1	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	t0106	3154	1	0	0	1	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	t0107	3154	1	0	0	1	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	t0108	3153	1	0	0	0	0	1	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	t0109	3152	1	0	0	1	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	t0110	3153	1	1	0	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	1/0	t0111	3151	1	0	0	0	0	0	copy fasta	SHANK1	chr19	50654255	50724802
SHANK1_chr19_50654255_50724802	0/0	t0112	3168	1	0	0	0	0	1	copy fasta	SHANK1	chr19	50654255	50724802
SHARPIN_chr8_144093637_144108773	1/1	t0001	185	332	96	75	106	16	37	copy fasta	SHARPIN	chr8	144093637	144108773
SHARPIN_chr8_144093637_144108773	0/0	t0002	185	1	0	1	0	0	0	copy fasta	SHARPIN	chr8	144093637	144108773
SHARPIN_chr8_144093637_144108773	0/0	t0003	185	1	0	0	0	0	1	copy fasta	SHARPIN	chr8	144093637	144108773
SHBG_chr17_7625135_7638372	1/1	t0001	59	430	91	77	202	16	42	copy fasta	SHBG	chr17	7625135	7638372
SHBG_chr17_7625135_7638372	0/0	t0002	59	1	0	1	0	0	0	copy fasta	SHBG	chr17	7625135	7638372