JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SHBG_chr17_7625135_7638372	0/0	t0003	59	1	1	0	0	0	0	copy fasta	SHBG	chr17	7625135	7638372
SHB_chr9_37910898_38074227	0/1	t0001	4506	69	6	19	27	3	13	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0002	4504	67	14	12	33	2	6	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0003	4438	34	7	11	9	0	7	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0004	4446	16	1	5	2	4	4	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0005	4508	11	0	1	10	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0006	4372	8	0	5	0	1	2	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0007	4510	8	0	0	8	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0008	4453	6	0	0	6	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0009	4438	5	5	0	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0010	4445	5	5	0	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0011	4446	4	0	2	0	1	1	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0012	4510	4	0	2	2	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0013	4572	4	0	0	4	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0014	4451	4	0	0	4	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0015	4506	3	3	0	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0016	4508	3	2	1	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0017	4440	3	1	0	2	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0018	4504	3	0	0	0	0	3	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0019	4506	2	2	0	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0020	4446	2	2	0	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0021	4440	2	2	0	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0022	4450	2	0	0	2	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0023	4506	2	2	0	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0024	4506	2	0	1	0	0	1	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0025	4446	2	1	0	0	0	1	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0026	4506	2	0	0	2	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0027	4570	2	0	1	0	0	1	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0028	4437	2	2	0	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0029	4451	2	0	0	1	0	1	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0030	4421	2	2	0	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0031	4448	2	2	0	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0032	4505	1	0	1	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0033	4440	1	1	0	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0034	4504	1	1	0	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0035	4506	1	1	0	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0036	4510	1	0	0	1	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0037	4444	1	0	0	1	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0038	4472	1	0	0	1	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0039	4508	1	0	0	1	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0040	4448	1	0	0	1	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0041	4578	1	0	0	0	0	1	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0042	4448	1	0	0	1	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0043	4508	1	0	0	1	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0044	4508	1	1	0	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0045	4506	1	0	0	0	0	1	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0046	4506	1	0	0	0	1	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	1/0	t0047	4506	1	0	0	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0048	4506	1	1	0	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0049	4446	1	1	0	0	0	0	copy fasta	SHB	chr9	37910898	38074227