JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SHB_chr9_37910898_38074227	0/0	t0050	4440	1	1	0	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0051	4506	1	1	0	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0052	4507	1	0	0	1	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0053	4510	1	0	0	1	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0054	4504	1	0	0	1	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0055	4504	1	0	1	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0056	4444	1	0	0	1	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0057	4438	1	0	0	0	0	1	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0058	4438	1	0	1	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0059	4438	1	0	0	0	0	1	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0060	4504	1	1	0	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0061	4378	1	1	0	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0062	4373	1	0	0	0	0	1	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0063	4372	1	0	0	0	0	1	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0064	4438	1	1	0	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0065	4504	1	0	0	1	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0066	4492	1	0	0	1	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0067	4506	1	0	1	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0068	4446	1	1	0	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0069	4506	1	0	0	0	0	1	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0070	4444	1	1	0	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0071	4444	1	1	0	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0072	4446	1	1	0	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0073	4510	1	0	0	0	0	1	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0074	4451	1	1	0	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0075	4449	1	1	0	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0076	4505	1	0	0	1	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0077	4504	1	1	0	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHB_chr9_37910898_38074227	0/0	t0078	4506	1	1	0	0	0	0	copy fasta	SHB	chr9	37910898	38074227
SHC1_chr1_154957298_154975747	1/1	t0001	1727	224	41	49	89	10	33	copy fasta	SHC1	chr1	154957298	154975747
SHC1_chr1_154957298_154975747	0/0	t0002	1727	51	45	5	0	0	1	copy fasta	SHC1	chr1	154957298	154975747
SHC1_chr1_154957298_154975747	0/0	t0003	1727	12	0	0	12	0	0	copy fasta	SHC1	chr1	154957298	154975747
SHC1_chr1_154957298_154975747	0/0	t0004	1727	3	3	0	0	0	0	copy fasta	SHC1	chr1	154957298	154975747
SHC1_chr1_154957298_154975747	0/0	t0005	1727	1	1	0	0	0	0	copy fasta	SHC1	chr1	154957298	154975747
SHC1_chr1_154957298_154975747	0/0	t0006	1727	1	1	0	0	0	0	copy fasta	SHC1	chr1	154957298	154975747
SHC1_chr1_154957298_154975747	0/0	t0007	1727	1	0	0	1	0	0	copy fasta	SHC1	chr1	154957298	154975747
SHC1_chr1_154957298_154975747	0/0	t0008	1727	1	1	0	0	0	0	copy fasta	SHC1	chr1	154957298	154975747
SHC2_chr19_411589_466033	0/1	t0001	777	104	5	28	51	4	15	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	0/0	t0002	777	28	9	1	14	1	3	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	0/0	t0003	777	20	9	3	6	0	2	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	0/0	t0004	777	19	2	7	6	0	4	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	1/0	t0005	777	17	11	2	0	1	2	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	0/0	t0006	777	13	13	0	0	0	0	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	0/0	t0007	777	2	2	0	0	0	0	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	0/0	t0008	777	1	0	1	0	0	0	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	0/0	t0009	777	1	0	1	0	0	0	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	0/0	t0010	777	1	0	0	1	0	0	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	0/0	t0011	777	1	1	0	0	0	0	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	0/0	t0012	777	1	0	1	0	0	0	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	0/0	t0013	777	1	1	0	0	0	0	copy fasta	SHC2	chr19	411589	466033