JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SHC2_chr19_411589_466033	0/0	t0014	777	1	1	0	0	0	0	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	0/0	t0015	777	1	1	0	0	0	0	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	0/0	t0016	777	1	1	0	0	0	0	copy fasta	SHC2	chr19	411589	466033
SHC3_chr9_89000771_89183818	0/0	t0001	8036	41	7	17	5	2	10	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	t0002	8034	36	9	18	0	6	3	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	t0003	8035	18	14	3	0	0	1	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	t0004	8035	11	3	5	0	1	2	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	t0005	8035	10	7	0	0	3	0	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	t0006	8035	6	0	2	0	1	3	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	t0007	8035	5	3	2	0	0	0	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	t0008	8035	4	2	0	1	0	1	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/1	t0009	8035	4	2	1	0	0	0	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	t0010	8034	4	2	0	0	1	1	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	t0011	8035	3	3	0	0	0	0	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	t0012	8035	3	3	0	0	0	0	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	t0013	8035	3	3	0	0	0	0	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	t0014	8035	3	2	1	0	0	0	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	t0015	8035	2	2	0	0	0	0	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	t0016	8035	2	0	1	0	0	1	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	t0017	8035	2	2	0	0	0	0	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	t0018	8035	2	2	0	0	0	0	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	t0019	8036	2	0	1	0	0	1	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	t0020	8035	1	1	0	0	0	0	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	t0021	8035	1	1	0	0	0	0	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	t0022	8035	1	1	0	0	0	0	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	t0023	8035	1	0	1	0	0	0	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	t0024	8035	1	0	1	0	0	0	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	t0025	8035	1	1	0	0	0	0	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	t0026	8035	1	1	0	0	0	0	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	t0027	8034	1	1	0	0	0	0	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	t0028	8034	1	1	0	0	0	0	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	t0029	8034	1	1	0	0	0	0	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	t0030	8034	1	1	0	0	0	0	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	t0031	8034	1	0	1	0	0	0	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	t0032	8034	1	0	0	1	0	0	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	t0033	8035	1	1	0	0	0	0	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	1/0	t0034	8035	1	0	0	0	0	0	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	t0035	8035	1	1	0	0	0	0	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	t0036	8036	1	0	0	0	0	1	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	t0037	8036	1	0	0	1	0	0	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	t0038	8036	1	0	1	0	0	0	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	t0039	8036	1	0	1	0	0	0	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	t0040	8036	1	0	0	0	0	1	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	t0041	8036	1	0	1	0	0	0	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	t0042	8036	1	0	1	0	0	0	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	t0043	8035	1	1	0	0	0	0	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	t0044	8035	1	0	0	0	0	1	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	t0045	8035	1	1	0	0	0	0	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	t0046	8035	1	1	0	0	0	0	copy fasta	SHC3	chr9	89000771	89183818
SHC4_chr15_48818741_48968919	0/1	t0001	3136	155	35	31	67	6	15	copy fasta	SHC4	chr15	48818741	48968919