JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SHD_chr19_4274266_4295722	0/0	t0008	888	5	0	0	5	0	0	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	0/0	t0009	889	3	3	0	0	0	0	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	0/0	t0010	888	2	0	0	2	0	0	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	0/0	t0011	888	2	0	0	2	0	0	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	0/0	t0012	888	1	0	0	1	0	0	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	0/0	t0013	888	1	0	0	1	0	0	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	0/0	t0014	888	1	0	0	1	0	0	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	0/0	t0015	888	1	1	0	0	0	0	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	0/0	t0016	888	1	0	1	0	0	0	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	0/0	t0017	888	1	0	0	1	0	0	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	0/0	t0018	889	1	0	0	1	0	0	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	0/0	t0019	889	1	0	1	0	0	0	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	0/0	t0020	888	1	0	0	1	0	0	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	0/0	t0021	888	1	0	1	0	0	0	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	0/0	t0022	888	1	0	0	0	0	1	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	0/0	t0023	833	1	1	0	0	0	0	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	0/0	t0024	889	1	1	0	0	0	0	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	0/0	t0025	888	1	1	0	0	0	0	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	0/0	t0026	888	1	1	0	0	0	0	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	0/0	t0027	888	1	0	1	0	0	0	copy fasta	SHD	chr19	4274266	4295722
SHE_chr1_154474481_154507412	0/1	t0001	5054	168	13	44	88	6	16	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0002	5054	62	14	11	30	3	4	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0003	5054	35	1	9	17	1	7	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0004	5055	21	16	1	2	0	2	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	1/0	t0005	5055	17	16	0	0	0	0	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0006	5055	14	14	0	0	0	0	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0007	5054	6	6	0	0	0	0	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0008	5055	5	1	0	4	0	0	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0009	5053	5	0	0	5	0	0	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0010	5054	3	0	0	3	0	0	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0011	5054	2	0	0	1	0	1	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0012	5053	2	0	1	1	0	0	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0013	5054	2	0	0	0	0	2	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0014	5054	2	2	0	0	0	0	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0015	5054	2	0	2	0	0	0	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0016	5054	2	0	0	2	0	0	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0017	5054	1	0	0	0	0	1	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0018	5054	1	0	0	1	0	0	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0019	5054	1	1	0	0	0	0	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0020	5054	1	1	0	0	0	0	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0021	5054	1	0	1	0	0	0	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0022	5055	1	1	0	0	0	0	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0023	5055	1	0	1	0	0	0	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0024	5054	1	1	0	0	0	0	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0025	5054	1	1	0	0	0	0	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0026	5055	1	0	0	1	0	0	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0027	5054	1	0	0	1	0	0	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0028	5054	1	1	0	0	0	0	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0029	5054	1	0	0	1	0	0	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0030	5054	1	0	0	0	0	1	copy fasta	SHE	chr1	154474481	154507412