Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BCAT1_chr12_24805024_24954101	0/0	t0056	8154	1	1	0	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0057	8155	1	1	0	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0058	8154	1	1	0	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0059	8155	1	1	0	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0060	8155	1	0	1	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0061	8155	1	1	0	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	1/0	t0062	8154	1	0	0	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0063	8153	1	1	0	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0064	8153	1	1	0	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0065	8155	1	0	0	1	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0066	8151	1	1	0	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0067	8151	1	1	0	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0068	8151	1	0	1	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0069	8150	1	0	0	0	0	1	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0070	8151	1	0	1	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0071	8151	1	0	1	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0072	8153	1	1	0	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0073	8154	1	1	0	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0074	8156	1	0	0	1	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0075	8154	1	0	0	1	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0076	8155	1	0	0	0	1	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0077	8154	1	0	0	0	1	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0078	8155	1	1	0	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0079	8156	1	0	0	1	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0080	8154	1	0	0	0	0	1	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0081	8155	1	1	0	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0082	8156	1	1	0	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0083	8156	1	0	0	0	0	1	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0084	8154	1	0	0	0	0	1	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0085	8154	1	1	0	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0086	8155	1	1	0	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0087	8154	1	0	1	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0088	8154	1	1	0	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0089	8154	1	1	0	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0090	8153	1	1	0	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0091	8155	1	1	0	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0092	8157	1	1	0	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0093	8157	1	1	0	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0094	8157	1	1	0	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0095	8157	1	0	0	1	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0096	8155	1	0	0	0	0	1	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0097	8155	1	1	0	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0098	8157	1	1	0	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0099	8157	1	0	0	0	1	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0100	8156	1	0	1	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0101	8154	1	0	1	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0102	8155	1	0	0	0	1	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0103	8156	1	0	1	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0104	8157	1	0	0	1	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0105	8157	1	0	0	1	0	0	copy fasta	BCAT1	chr12	24805024	24954101