JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SHE_chr1_154474481_154507412	0/0	t0031	5054	1	0	0	1	0	0	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0032	5054	1	1	0	0	0	0	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0033	5054	1	0	0	1	0	0	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0034	5055	1	0	0	1	0	0	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0035	5054	1	0	0	1	0	0	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0036	5054	1	0	0	1	0	0	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0037	5054	1	0	0	1	0	0	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0038	5054	1	0	0	1	0	0	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0039	5054	1	0	0	0	0	1	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0040	5054	1	0	0	0	0	1	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0041	5054	1	0	0	0	0	1	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0042	5053	1	0	0	1	0	0	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0043	5054	1	0	0	1	0	0	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0044	5054	1	0	0	1	0	0	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0045	5054	1	0	0	0	0	1	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0046	5054	1	0	0	1	0	0	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0047	5054	1	0	1	0	0	0	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0048	5054	1	0	1	0	0	0	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0049	5055	1	0	0	1	0	0	copy fasta	SHE	chr1	154474481	154507412
SHE_chr1_154474481_154507412	0/0	t0050	5054	1	0	0	1	0	0	copy fasta	SHE	chr1	154474481	154507412
SHFL_chr19_10081317_10098243	1/1	t0001	1053	425	89	80	193	13	48	copy fasta	SHFL	chr19	10081317	10098243
SHFL_chr19_10081317_10098243	0/0	t0002	1053	8	3	4	0	1	0	copy fasta	SHFL	chr19	10081317	10098243
SHFL_chr19_10081317_10098243	0/0	t0003	1053	7	0	0	7	0	0	copy fasta	SHFL	chr19	10081317	10098243
SHFL_chr19_10081317_10098243	0/0	t0004	1053	2	0	0	2	0	0	copy fasta	SHFL	chr19	10081317	10098243
SHFL_chr19_10081317_10098243	0/0	t0005	1053	1	0	0	1	0	0	copy fasta	SHFL	chr19	10081317	10098243
SHFL_chr19_10081317_10098243	0/0	t0006	1026	1	0	0	1	0	0	copy fasta	SHFL	chr19	10081317	10098243
SHF_chr15_45162214_45192966	1/0	t0001	749	165	49	14	90	0	11	copy fasta	SHF	chr15	45162214	45192966
SHF_chr15_45162214_45192966	0/1	t0002	749	162	24	51	60	9	17	copy fasta	SHF	chr15	45162214	45192966
SHF_chr15_45162214_45192966	0/0	t0003	749	60	16	3	30	1	10	copy fasta	SHF	chr15	45162214	45192966
SHF_chr15_45162214_45192966	0/0	t0004	749	4	2	2	0	0	0	copy fasta	SHF	chr15	45162214	45192966
SHF_chr15_45162214_45192966	0/0	t0005	749	2	0	2	0	0	0	copy fasta	SHF	chr15	45162214	45192966
SHF_chr15_45162214_45192966	0/0	t0006	749	1	0	0	0	0	1	copy fasta	SHF	chr15	45162214	45192966
SHF_chr15_45162214_45192966	0/0	t0007	749	1	0	0	0	0	1	copy fasta	SHF	chr15	45162214	45192966
SHF_chr15_45162214_45192966	0/0	t0008	749	1	0	0	1	0	0	copy fasta	SHF	chr15	45162214	45192966
SHF_chr15_45162214_45192966	0/0	t0009	749	1	1	0	0	0	0	copy fasta	SHF	chr15	45162214	45192966
SHF_chr15_45162214_45192966	0/0	t0010	749	1	0	0	1	0	0	copy fasta	SHF	chr15	45162214	45192966
SHH_chr7_155794980_155817463	0/0	t0001	3259	114	2	25	69	4	14	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0002	3260	24	1	1	15	1	6	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0003	3261	24	2	6	13	0	3	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0004	3261	17	0	1	14	1	1	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0005	3259	14	0	1	9	1	3	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0006	3262	12	7	1	3	0	1	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0007	3259	10	2	1	2	0	5	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0008	3261	9	2	1	3	0	3	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0009	3262	9	4	2	1	0	2	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0010	3262	9	0	1	5	0	3	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0011	3263	9	7	2	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0012	3258	7	0	1	6	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0013	3258	7	0	0	7	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0014	3265	6	2	2	1	0	1	copy fasta	SHH	chr7	155794980	155817463