JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SHH_chr7_155794980_155817463	0/0	t0015	3269	6	4	2	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0016	3268	5	4	1	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0017	3265	4	1	2	0	1	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0018	3267	4	3	0	0	0	1	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0019	3269	4	4	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/1	t0020	3259	4	0	0	0	2	1	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0021	3260	4	0	0	3	1	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0022	3261	3	3	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0023	3260	3	1	1	1	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0024	3261	3	0	2	0	1	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0025	3259	3	0	0	3	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0026	3265	2	0	1	1	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0027	3268	2	1	1	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0028	3268	2	2	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0029	3262	2	2	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0030	3259	2	0	0	2	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0031	3262	2	1	1	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0032	3263	2	2	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0033	3263	2	2	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0034	3260	2	0	2	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0035	3266	2	2	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0036	3266	2	0	2	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0037	3261	2	2	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0038	3263	2	2	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0039	3263	2	2	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0040	3262	2	2	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0041	3261	2	0	1	0	0	1	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0042	3266	1	1	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0043	3268	1	0	1	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0044	3258	1	0	1	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0045	3259	1	0	1	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0046	3262	1	0	1	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0047	3258	1	0	1	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0048	3266	1	0	1	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0049	3268	1	0	0	0	1	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0050	3269	1	0	1	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0051	3265	1	0	0	1	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0052	3266	1	0	0	1	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0053	3255	1	1	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0054	3261	1	1	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0055	3262	1	1	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0056	3262	1	1	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0057	3262	1	1	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0058	3263	1	1	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0059	3269	1	1	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0060	3264	1	0	1	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0061	3265	1	0	0	0	1	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0062	3266	1	0	0	0	1	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0063	3266	1	0	0	0	1	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0064	3267	1	0	1	0	0	0	copy fasta	SHH	chr7	155794980	155817463