JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SHH_chr7_155794980_155817463	0/0	t0065	3268	1	1	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0066	3268	1	1	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0067	3269	1	1	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0068	3269	1	1	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0069	3264	1	0	0	1	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0070	3263	1	1	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0071	3255	1	1	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0072	3261	1	1	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0073	3259	1	0	0	1	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0074	3254	1	1	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0075	3254	1	1	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0076	3254	1	1	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0077	3254	1	1	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0078	3259	1	0	0	0	0	1	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0079	3263	1	1	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0080	3263	1	0	1	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0081	3262	1	0	1	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0082	3251	1	0	0	1	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0083	3254	1	0	0	1	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0084	3255	1	1	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0085	3258	1	0	0	1	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0086	3259	1	0	0	1	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0087	3259	1	0	0	1	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0088	3259	1	0	0	1	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0089	3260	1	0	0	1	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0090	3260	1	0	0	1	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0091	3261	1	0	0	1	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0092	3261	1	0	1	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0093	3262	1	1	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	1/0	t0094	3262	1	0	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0095	3262	1	1	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0096	3263	1	0	1	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0097	3263	1	1	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0098	3263	1	1	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0099	3263	1	1	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0100	3263	1	1	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0101	3259	1	0	0	1	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0102	3260	1	1	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0103	3259	1	0	0	1	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0104	3257	1	0	0	1	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0105	3258	1	0	0	1	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0106	3259	1	0	0	1	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0107	3260	1	0	0	1	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0108	3260	1	0	0	1	0	0	copy fasta	SHH	chr7	155794980	155817463
SHH_chr7_155794980_155817463	0/0	t0109	3255	1	1	0	0	0	0	copy fasta	SHH	chr7	155794980	155817463
SHISA2_chr13_26039597_26057016	0/0	t0001	2953	64	5	21	27	5	6	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0002	2949	48	8	3	35	0	2	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0003	2952	45	3	13	25	4	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0004	2958	39	1	11	26	0	1	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/1	t0005	2953	29	1	4	21	0	2	copy fasta	SHISA2	chr13	26039597	26057016