JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SHISA2_chr13_26039597_26057016	0/0	t0006	2953	15	11	3	0	0	1	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0007	2954	15	1	0	13	0	1	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0008	2953	14	3	2	1	3	5	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0009	2952	12	0	2	8	0	2	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0010	2953	8	1	3	2	1	1	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0011	2957	8	0	3	4	0	1	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0012	2959	8	0	1	7	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0013	2952	6	6	0	0	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0014	2953	6	3	1	0	0	2	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0015	2953	6	0	1	2	0	3	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0016	2953	5	0	2	0	1	2	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0017	2953	5	0	2	0	1	2	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0018	2949	4	0	0	4	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0019	2952	4	4	0	0	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0020	2954	4	0	1	2	0	1	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0021	2954	4	3	0	0	0	1	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0022	2952	4	4	0	0	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	1/0	t0023	2958	4	3	0	0	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0024	2950	3	0	0	3	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0025	2952	3	0	0	2	1	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0026	2954	3	0	1	2	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0027	2949	3	3	0	0	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0028	2953	3	2	1	0	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0029	2957	3	3	0	0	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0030	2958	3	1	0	2	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0031	2959	3	0	0	3	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0032	2953	3	0	0	2	0	1	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0033	2953	3	3	0	0	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0034	2953	2	2	0	0	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0035	2954	2	2	0	0	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0036	2952	2	0	0	0	2	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0037	2952	2	0	0	2	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0038	2954	2	2	0	0	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0039	2949	2	2	0	0	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0040	2953	2	2	0	0	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0041	2959	2	2	0	0	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0042	2953	2	0	0	0	0	2	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0043	2953	2	0	0	0	0	2	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0044	2952	2	0	0	0	0	2	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0045	2952	1	0	1	0	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0046	2954	1	1	0	0	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0047	2953	1	1	0	0	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0048	2954	1	1	0	0	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0049	2954	1	0	0	1	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0050	2949	1	0	0	0	0	1	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0051	2949	1	0	1	0	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0052	2953	1	1	0	0	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0053	2954	1	1	0	0	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0054	2953	1	0	0	0	0	1	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0055	2953	1	0	0	1	0	0	copy fasta	SHISA2	chr13	26039597	26057016