JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SHISA2_chr13_26039597_26057016	0/0	t0056	2953	1	0	0	1	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0057	2953	1	1	0	0	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0058	2953	1	0	0	0	0	1	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0059	2954	1	0	0	1	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0060	2953	1	0	0	1	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0061	2954	1	0	0	1	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0062	2953	1	1	0	0	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0063	2953	1	0	0	1	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0064	2949	1	1	0	0	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0065	2953	1	1	0	0	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0066	2953	1	0	0	1	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0067	2949	1	0	0	0	0	1	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0068	2952	1	1	0	0	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0069	2954	1	1	0	0	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0070	2953	1	0	0	1	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0071	2954	1	0	0	1	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0072	2957	1	0	0	1	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0073	2957	1	0	0	1	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0074	2958	1	0	0	1	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0075	2958	1	0	0	1	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0076	2958	1	0	1	0	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0077	2954	1	0	0	1	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0078	2954	1	0	0	0	0	1	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0079	2952	1	0	1	0	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0080	2953	1	0	1	0	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0081	2954	1	0	0	0	0	1	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0082	2949	1	0	0	1	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0083	2949	1	0	0	1	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0084	2954	1	1	0	0	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0085	2954	1	0	0	0	0	1	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0086	2952	1	0	1	0	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0087	2953	1	0	0	0	0	1	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0088	2953	1	1	0	0	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0089	2952	1	1	0	0	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0090	2953	1	0	1	0	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA2_chr13_26039597_26057016	0/0	t0091	2954	1	1	0	0	0	0	copy fasta	SHISA2	chr13	26039597	26057016
SHISA3_chr4_42392488_42407487	0/0	t0001	1606	184	69	47	41	4	23	copy fasta	SHISA3	chr4	42392488	42407487
SHISA3_chr4_42392488_42407487	0/1	t0002	1606	116	2	10	86	2	15	copy fasta	SHISA3	chr4	42392488	42407487
SHISA3_chr4_42392488_42407487	1/0	t0003	1606	67	2	11	43	4	6	copy fasta	SHISA3	chr4	42392488	42407487
SHISA3_chr4_42392488_42407487	0/0	t0004	1606	18	16	2	0	0	0	copy fasta	SHISA3	chr4	42392488	42407487
SHISA3_chr4_42392488_42407487	0/0	t0005	1605	7	0	2	0	2	3	copy fasta	SHISA3	chr4	42392488	42407487
SHISA3_chr4_42392488_42407487	0/0	t0006	1606	6	0	3	0	3	0	copy fasta	SHISA3	chr4	42392488	42407487
SHISA3_chr4_42392488_42407487	0/0	t0007	1606	5	3	2	0	0	0	copy fasta	SHISA3	chr4	42392488	42407487
SHISA3_chr4_42392488_42407487	0/0	t0008	1606	4	4	0	0	0	0	copy fasta	SHISA3	chr4	42392488	42407487
SHISA3_chr4_42392488_42407487	0/0	t0009	1606	3	0	2	0	1	0	copy fasta	SHISA3	chr4	42392488	42407487
SHISA3_chr4_42392488_42407487	0/0	t0010	1606	1	0	0	1	0	0	copy fasta	SHISA3	chr4	42392488	42407487
SHISA3_chr4_42392488_42407487	0/0	t0011	1606	1	1	0	0	0	0	copy fasta	SHISA3	chr4	42392488	42407487
SHISA3_chr4_42392488_42407487	0/0	t0012	1606	1	1	0	0	0	0	copy fasta	SHISA3	chr4	42392488	42407487
SHISA3_chr4_42392488_42407487	0/0	t0013	1606	1	0	1	0	0	0	copy fasta	SHISA3	chr4	42392488	42407487
SHISA3_chr4_42392488_42407487	0/0	t0014	1606	1	0	0	1	0	0	copy fasta	SHISA3	chr4	42392488	42407487