JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SHISA3_chr4_42392488_42407487	0/0	t0015	1606	1	0	0	0	0	1	copy fasta	SHISA3	chr4	42392488	42407487
SHISA4_chr1_201883898_201897587	1/0	t0001	839	224	47	50	93	8	25	copy fasta	SHISA4	chr1	201883898	201897587
SHISA4_chr1_201883898_201897587	0/1	t0002	839	116	12	16	68	7	12	copy fasta	SHISA4	chr1	201883898	201897587
SHISA4_chr1_201883898_201897587	0/0	t0003	839	53	12	12	19	2	8	copy fasta	SHISA4	chr1	201883898	201897587
SHISA4_chr1_201883898_201897587	0/0	t0004	839	12	12	0	0	0	0	copy fasta	SHISA4	chr1	201883898	201897587
SHISA4_chr1_201883898_201897587	0/0	t0005	839	4	0	3	0	0	1	copy fasta	SHISA4	chr1	201883898	201897587
SHISA4_chr1_201883898_201897587	0/0	t0006	839	3	2	1	0	0	0	copy fasta	SHISA4	chr1	201883898	201897587
SHISA4_chr1_201883898_201897587	0/0	t0007	839	2	2	0	0	0	0	copy fasta	SHISA4	chr1	201883898	201897587
SHISA4_chr1_201883898_201897587	0/0	t0008	839	1	1	0	0	0	0	copy fasta	SHISA4	chr1	201883898	201897587
SHISA4_chr1_201883898_201897587	0/0	t0009	839	1	1	0	0	0	0	copy fasta	SHISA4	chr1	201883898	201897587
SHISA4_chr1_201883898_201897587	0/0	t0010	839	1	1	0	0	0	0	copy fasta	SHISA4	chr1	201883898	201897587
SHISA4_chr1_201883898_201897587	0/0	t0011	839	1	0	0	0	1	0	copy fasta	SHISA4	chr1	201883898	201897587
SHISA5_chr3_48462876_48509174	1/1	t0001	1312	269	68	56	96	9	38	copy fasta	SHISA5	chr3	48462876	48509174
SHISA5_chr3_48462876_48509174	0/0	t0002	1312	8	8	0	0	0	0	copy fasta	SHISA5	chr3	48462876	48509174
SHISA5_chr3_48462876_48509174	0/0	t0003	1312	3	3	0	0	0	0	copy fasta	SHISA5	chr3	48462876	48509174
SHISA5_chr3_48462876_48509174	0/0	t0004	1312	2	0	0	2	0	0	copy fasta	SHISA5	chr3	48462876	48509174
SHISA5_chr3_48462876_48509174	0/0	t0005	1312	2	2	0	0	0	0	copy fasta	SHISA5	chr3	48462876	48509174
SHISA5_chr3_48462876_48509174	0/0	t0006	1312	1	0	0	1	0	0	copy fasta	SHISA5	chr3	48462876	48509174
SHISA5_chr3_48462876_48509174	0/0	t0007	1312	1	1	0	0	0	0	copy fasta	SHISA5	chr3	48462876	48509174
SHISA5_chr3_48462876_48509174	0/0	t0008	1312	1	0	1	0	0	0	copy fasta	SHISA5	chr3	48462876	48509174
SHISA5_chr3_48462876_48509174	0/0	t0009	1312	1	0	0	0	1	0	copy fasta	SHISA5	chr3	48462876	48509174
SHISA5_chr3_48462876_48509174	0/0	t0010	1312	1	0	0	1	0	0	copy fasta	SHISA5	chr3	48462876	48509174
SHISA5_chr3_48462876_48509174	0/0	t0011	1272	1	0	1	0	0	0	copy fasta	SHISA5	chr3	48462876	48509174
SHISA6_chr17_11236213_11569063	0/1	t0001	5970	35	7	10	10	3	4	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0002	5970	22	4	6	8	2	2	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	1/0	t0003	5970	20	3	6	7	0	3	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0004	5970	15	9	2	2	1	1	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0005	5970	6	0	0	6	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0006	5970	6	0	0	4	0	2	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0007	5970	6	6	0	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0008	5958	6	6	0	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0009	5968	6	6	0	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0010	5970	5	0	0	5	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0011	5970	5	4	1	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0012	5970	5	4	1	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0013	5968	4	4	0	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0014	5969	4	0	3	1	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0015	5970	3	3	0	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0016	5968	3	3	0	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0017	5970	3	3	0	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0018	5970	2	2	0	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0019	5970	2	0	0	0	1	1	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0020	5970	2	2	0	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0021	5969	1	1	0	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0022	5970	1	1	0	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0023	5970	1	0	0	1	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0024	5970	1	0	1	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0025	5970	1	0	1	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0026	5970	1	0	0	0	0	1	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0027	5970	1	1	0	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063