JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SHISA6_chr17_11236213_11569063	0/0	t0028	5970	1	1	0	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0029	5970	1	0	0	1	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0030	5958	1	1	0	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0031	5970	1	1	0	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0032	5970	1	1	0	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0033	5970	1	0	0	0	0	1	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0034	5970	1	1	0	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0035	5970	1	1	0	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0036	5968	1	1	0	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0037	5970	1	1	0	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0038	5968	1	0	1	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0039	5968	1	1	0	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0040	5968	1	1	0	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0041	5968	1	0	1	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0042	5968	1	1	0	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0043	5968	1	1	0	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0044	5970	1	1	0	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0045	5970	1	0	0	0	0	1	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0046	5970	1	0	0	1	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0047	5970	1	0	1	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0048	5970	1	1	0	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0049	5970	1	0	0	0	1	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0050	5970	1	1	0	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0051	5970	1	1	0	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA6_chr17_11236213_11569063	0/0	t0052	5970	1	1	0	0	0	0	copy fasta	SHISA6	chr17	11236213	11569063
SHISA7_chr19_55423740_55448300	0/1	t0001	4855	146	5	23	94	5	18	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	1/0	t0002	4854	69	21	21	4	4	18	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	0/0	t0003	4854	68	11	16	39	0	2	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	0/0	t0004	4855	13	11	2	0	0	0	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	0/0	t0005	4854	13	13	0	0	0	0	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	0/0	t0006	4854	5	1	3	0	1	0	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	0/0	t0007	4855	5	1	2	0	0	2	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	0/0	t0008	4856	4	2	0	1	0	1	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	0/0	t0009	4854	4	3	1	0	0	0	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	0/0	t0010	4854	4	3	1	0	0	0	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	0/0	t0011	4854	4	4	0	0	0	0	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	0/0	t0012	4856	3	0	0	3	0	0	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	0/0	t0013	4854	3	3	0	0	0	0	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	0/0	t0014	4854	3	3	0	0	0	0	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	0/0	t0015	4850	3	3	0	0	0	0	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	0/0	t0016	4854	2	0	0	0	0	2	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	0/0	t0017	4855	2	0	0	2	0	0	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	0/0	t0018	4854	2	0	0	0	2	0	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	0/0	t0019	4875	1	0	0	0	0	1	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	0/0	t0020	4854	1	1	0	0	0	0	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	0/0	t0021	4855	1	0	0	1	0	0	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	0/0	t0022	4855	1	1	0	0	0	0	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	0/0	t0023	4855	1	0	0	0	0	1	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	0/0	t0024	4855	1	0	0	0	0	1	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	0/0	t0025	4855	1	0	0	1	0	0	copy fasta	SHISA7	chr19	55423740	55448300