JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SHISA7_chr19_55423740_55448300	0/0	t0026	4854	1	1	0	0	0	0	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	0/0	t0027	4854	1	1	0	0	0	0	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	0/0	t0028	4854	1	1	0	0	0	0	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	0/0	t0029	4854	1	0	0	1	0	0	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	0/0	t0030	4854	1	0	1	0	0	0	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	0/0	t0031	4854	1	1	0	0	0	0	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	0/0	t0032	4854	1	1	0	0	0	0	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	0/0	t0033	4854	1	1	0	0	0	0	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	0/0	t0034	4854	1	1	0	0	0	0	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	0/0	t0035	4854	1	1	0	0	0	0	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	0/0	t0036	4854	1	0	1	0	0	0	copy fasta	SHISA7	chr19	55423740	55448300
SHISA7_chr19_55423740_55448300	0/0	t0037	4854	1	0	1	0	0	0	copy fasta	SHISA7	chr19	55423740	55448300
SHISA8_chr22_41904543_41920074	1/0	t0001	630	314	57	64	137	12	43	copy fasta	SHISA8	chr22	41904543	41920074
SHISA8_chr22_41904543_41920074	0/0	t0002	630	26	24	2	0	0	0	copy fasta	SHISA8	chr22	41904543	41920074
SHISA8_chr22_41904543_41920074	0/1	t0003	630	26	2	5	13	2	3	copy fasta	SHISA8	chr22	41904543	41920074
SHISA8_chr22_41904543_41920074	0/0	t0004	630	4	3	1	0	0	0	copy fasta	SHISA8	chr22	41904543	41920074
SHISA8_chr22_41904543_41920074	0/0	t0005	630	2	2	0	0	0	0	copy fasta	SHISA8	chr22	41904543	41920074
SHISA8_chr22_41904543_41920074	0/0	t0006	630	1	1	0	0	0	0	copy fasta	SHISA8	chr22	41904543	41920074
SHISA8_chr22_41904543_41920074	0/0	t0007	630	1	0	0	0	0	1	copy fasta	SHISA8	chr22	41904543	41920074
SHISA8_chr22_41904543_41920074	0/0	t0008	630	1	0	0	0	0	1	copy fasta	SHISA8	chr22	41904543	41920074
SHISA8_chr22_41904543_41920074	0/0	t0009	630	1	1	0	0	0	0	copy fasta	SHISA8	chr22	41904543	41920074
SHISA9_chr16_12896598_13245416	0/0	t0001	5481	23	3	2	14	1	3	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0002	5480	18	3	7	6	1	1	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0003	5476	11	2	1	7	0	1	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0004	5478	8	2	3	2	0	1	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0005	5476	7	4	2	0	1	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0006	5474	7	6	1	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0007	5460	6	0	0	5	0	1	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0008	5481	5	4	0	0	0	1	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0009	5475	5	5	0	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0010	5464	4	0	3	1	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0011	5465	4	0	1	2	0	1	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0012	5479	4	2	0	1	0	1	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0013	5473	4	4	0	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0014	5473	4	4	0	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0015	5473	3	0	0	3	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0016	5473	3	0	0	3	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0017	5481	3	0	0	3	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0018	5465	2	0	0	2	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0019	5483	2	0	0	2	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0020	5479	2	2	0	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0021	5473	2	2	0	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0022	5475	2	0	1	0	1	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0023	5484	2	1	0	1	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0024	5480	2	2	0	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0025	5476	2	0	2	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0026	5477	2	0	1	1	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0027	5483	2	0	0	2	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0028	5478	2	1	0	1	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0029	5484	2	0	2	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416