JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SHISA9_chr16_12896598_13245416	0/0	t0030	5487	2	0	0	2	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0031	5474	2	2	0	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0032	5478	2	0	0	2	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0033	5460	1	1	0	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0034	5457	1	1	0	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0035	5465	1	0	0	0	1	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0036	5463	1	0	1	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0037	5463	1	1	0	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0038	5466	1	0	0	0	1	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0039	5458	1	1	0	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0040	5459	1	0	0	0	0	1	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0041	5473	1	0	0	1	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0042	5479	1	0	0	1	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0043	5482	1	0	0	1	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0044	5485	1	0	0	1	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0045	5473	1	0	0	0	0	1	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0046	5472	1	1	0	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0047	5476	1	0	0	0	0	1	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0048	5474	1	1	0	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0049	5477	1	1	0	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0050	5480	1	1	0	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0051	5476	1	0	0	1	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0052	5479	1	1	0	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0053	5476	1	1	0	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0054	5476	1	1	0	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0055	5470	1	1	0	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0056	5477	1	1	0	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0057	5483	1	0	0	0	0	1	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0058	5486	1	1	0	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0059	5477	1	1	0	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0060	5473	1	1	0	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0061	5473	1	1	0	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0062	5473	1	1	0	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0063	5479	1	1	0	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0064	5470	1	1	0	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0065	5474	1	1	0	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0066	5474	1	1	0	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0067	5480	1	0	0	1	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0068	5479	1	1	0	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0069	5480	1	0	0	0	0	1	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0070	5483	1	0	0	0	0	1	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0071	5475	1	0	1	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0072	5481	1	0	0	0	0	1	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0073	5469	1	0	0	0	0	1	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0074	5475	1	0	0	0	0	1	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0075	5481	1	0	0	1	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0076	5471	1	1	0	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0077	5474	1	0	1	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0078	5477	1	0	0	0	0	1	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0079	5480	1	0	1	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416