JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SHISA9_chr16_12896598_13245416	0/0	t0080	5475	1	1	0	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0081	5481	1	0	0	0	0	1	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0082	5477	1	1	0	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0083	5480	1	1	0	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0084	5470	1	0	0	0	0	1	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0085	5482	1	0	1	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0086	5484	1	0	0	1	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0087	5484	1	0	1	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0088	5473	1	0	1	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0089	5473	1	0	0	0	0	1	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0090	5476	1	0	0	0	0	1	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0091	5475	1	0	0	0	0	1	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0092	5478	1	0	0	0	0	1	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0093	5459	1	1	0	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0094	5462	1	0	0	0	0	1	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0095	5467	1	0	0	0	0	1	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0096	5464	1	0	1	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISA9_chr16_12896598_13245416	0/0	t0097	5462	1	1	0	0	0	0	copy fasta	SHISA9	chr16	12896598	13245416
SHISAL1_chr22_44238665_44317951	0/0	t0001	6272	59	5	5	42	2	5	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0002	6287	51	2	6	28	4	11	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0003	6287	36	8	17	5	3	3	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/1	t0004	6254	20	0	3	10	2	4	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0005	6298	17	0	0	16	1	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0006	6287	17	0	1	14	1	1	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0007	6287	12	0	10	1	1	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0008	6287	11	0	0	10	0	1	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0009	6287	11	0	0	11	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0010	6287	8	8	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0011	6272	7	7	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0012	6287	5	0	1	2	1	1	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	1/0	t0013	6254	4	0	2	0	0	1	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0014	6272	4	0	2	2	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0015	6254	4	0	0	4	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0016	6298	3	1	0	2	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0017	6287	3	3	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0018	6287	3	3	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0019	6287	3	3	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0020	6254	3	3	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0021	6272	3	0	0	3	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0022	6272	3	3	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0023	6287	2	2	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0024	6332	2	2	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0025	6287	2	0	0	0	0	2	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0026	6287	2	0	0	2	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0027	6283	2	1	1	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0028	6287	2	2	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0029	6298	2	0	2	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0030	6287	2	2	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0031	6287	2	0	1	0	1	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0032	6287	2	2	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951