Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BCAT1_chr12_24805024_24954101	0/0	t0106	8155	1	0	0	0	0	1	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0107	8156	1	0	0	0	0	1	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0108	8155	1	1	0	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0109	8156	1	1	0	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0110	8156	1	0	1	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0111	8155	1	0	1	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0112	8155	1	1	0	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0113	8155	1	1	0	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0114	8155	1	1	0	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0115	8157	1	1	0	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0116	8156	1	0	0	1	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0117	8155	1	0	0	0	0	1	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0118	8156	1	0	0	1	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0119	8154	1	0	1	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0120	8154	1	0	0	0	0	1	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0121	8155	1	0	1	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0122	8154	1	0	0	1	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0123	8154	1	0	0	0	0	1	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0124	8154	1	0	0	1	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0125	8156	1	0	0	1	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0126	8157	1	0	0	1	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0127	8155	1	0	0	0	0	1	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0128	8154	1	0	0	1	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0129	8156	1	0	0	1	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0130	8155	1	0	0	1	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0131	8154	1	0	0	1	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0132	8154	1	0	1	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0133	8157	1	0	0	1	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0134	8156	1	0	0	1	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT1_chr12_24805024_24954101	0/0	t0135	8156	1	0	1	0	0	0	copy fasta	BCAT1	chr12	24805024	24954101
BCAT2_chr19_48790064_48816029	1/1	t0001	385	405	93	82	172	16	40	copy fasta	BCAT2	chr19	48790064	48816029
BCAT2_chr19_48790064_48816029	0/0	t0002	385	1	1	0	0	0	0	copy fasta	BCAT2	chr19	48790064	48816029
BCAT2_chr19_48790064_48816029	0/0	t0003	385	1	1	0	0	0	0	copy fasta	BCAT2	chr19	48790064	48816029
BCAT2_chr19_48790064_48816029	0/0	t0004	385	1	1	0	0	0	0	copy fasta	BCAT2	chr19	48790064	48816029
BCCIP_chr10_125818546_125841551	1/1	t0001	290	298	62	52	145	9	28	copy fasta	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	t0002	290	143	24	23	71	5	20	copy fasta	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	t0003	290	4	4	0	0	0	0	copy fasta	BCCIP	chr10	125818546	125841551
BCCIP_chr10_125818546_125841551	0/0	t0004	290	1	0	1	0	0	0	copy fasta	BCCIP	chr10	125818546	125841551
BCDIN3D_chr12_49831043_49848106	0/0	t0001	2348	104	2	17	82	0	3	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/1	t0002	2346	93	7	21	46	7	11	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	1/0	t0003	2348	51	5	15	15	2	13	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	t0004	2347	21	2	3	13	0	3	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	t0005	2347	18	8	5	2	0	3	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	t0006	2349	15	1	2	8	2	2	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	t0007	2335	13	5	1	0	3	4	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	t0008	2349	12	0	1	11	0	0	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	t0009	2348	11	11	0	0	0	0	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	t0010	2346	10	9	1	0	0	0	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	t0011	2348	10	10	0	0	0	0	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	t0012	2348	7	7	0	0	0	0	copy fasta	BCDIN3D	chr12	49831043	49848106