JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SHISAL1_chr22_44238665_44317951	0/0	t0083	6287	1	1	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0084	6287	1	1	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0085	6287	1	0	0	0	0	1	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0086	6298	1	0	0	1	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0087	6287	1	0	0	1	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0088	6287	1	1	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0089	6287	1	0	0	1	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0090	6287	1	0	1	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0091	6332	1	1	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0092	6332	1	1	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0093	6287	1	1	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0094	6290	1	0	0	1	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0095	6272	1	0	0	1	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0096	6272	1	0	1	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0097	6287	1	0	0	1	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0098	6254	1	0	0	0	0	1	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0099	6254	1	0	0	0	0	1	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0100	6273	1	1	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0101	6287	1	0	1	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL1_chr22_44238665_44317951	0/0	t0102	6254	1	1	0	0	0	0	copy fasta	SHISAL1	chr22	44238665	44317951
SHISAL2A_chr1_52628168_52662065	1/0	t0001	352	382	75	67	181	14	44	copy fasta	SHISAL2A	chr1	52628168	52662065
SHISAL2A_chr1_52628168_52662065	0/1	t0002	352	39	23	8	2	2	3	copy fasta	SHISAL2A	chr1	52628168	52662065
SHISAL2A_chr1_52628168_52662065	0/0	t0003	352	13	0	1	9	0	3	copy fasta	SHISAL2A	chr1	52628168	52662065
SHISAL2A_chr1_52628168_52662065	0/0	t0004	352	10	0	0	10	0	0	copy fasta	SHISAL2A	chr1	52628168	52662065
SHISAL2B_chr5_64685503_64723190	1/1	t0001	290	223	59	50	84	9	19	copy fasta	SHISAL2B	chr5	64685503	64723190
SHISAL2B_chr5_64685503_64723190	0/0	t0002	290	155	29	25	78	5	18	copy fasta	SHISAL2B	chr5	64685503	64723190
SHISAL2B_chr5_64685503_64723190	0/0	t0003	290	7	7	0	0	0	0	copy fasta	SHISAL2B	chr5	64685503	64723190
SHISAL2B_chr5_64685503_64723190	0/0	t0004	289	3	0	1	0	0	2	copy fasta	SHISAL2B	chr5	64685503	64723190
SHISAL2B_chr5_64685503_64723190	0/0	t0005	290	1	0	0	0	0	1	copy fasta	SHISAL2B	chr5	64685503	64723190
SHISAL2B_chr5_64685503_64723190	0/0	t0006	290	1	1	0	0	0	0	copy fasta	SHISAL2B	chr5	64685503	64723190
SHKBP1_chr19_40571873_40596397	0/1	t0001	218	214	64	45	74	6	24	copy fasta	SHKBP1	chr19	40571873	40596397
SHKBP1_chr19_40571873_40596397	1/0	t0002	218	170	27	34	82	10	16	copy fasta	SHKBP1	chr19	40571873	40596397
SHKBP1_chr19_40571873_40596397	0/0	t0003	218	5	0	0	5	0	0	copy fasta	SHKBP1	chr19	40571873	40596397
SHKBP1_chr19_40571873_40596397	0/0	t0004	218	1	1	0	0	0	0	copy fasta	SHKBP1	chr19	40571873	40596397
SHKBP1_chr19_40571873_40596397	0/0	t0005	218	1	0	0	1	0	0	copy fasta	SHKBP1	chr19	40571873	40596397
SHKBP1_chr19_40571873_40596397	0/0	t0006	218	1	0	1	0	0	0	copy fasta	SHKBP1	chr19	40571873	40596397
SHLD1_chr20_5745401_5869395	1/1	t0001	1016	126	32	29	45	4	14	copy fasta	SHLD1	chr20	5745401	5869395
SHLD1_chr20_5745401_5869395	0/0	t0002	1016	102	38	21	23	10	10	copy fasta	SHLD1	chr20	5745401	5869395
SHLD1_chr20_5745401_5869395	0/0	t0003	1016	45	1	6	27	0	11	copy fasta	SHLD1	chr20	5745401	5869395
SHLD1_chr20_5745401_5869395	0/0	t0004	1016	31	5	3	14	0	9	copy fasta	SHLD1	chr20	5745401	5869395
SHLD1_chr20_5745401_5869395	0/0	t0005	1016	15	14	1	0	0	0	copy fasta	SHLD1	chr20	5745401	5869395
SHLD1_chr20_5745401_5869395	0/0	t0006	1016	3	3	0	0	0	0	copy fasta	SHLD1	chr20	5745401	5869395
SHLD1_chr20_5745401_5869395	0/0	t0007	1016	1	1	0	0	0	0	copy fasta	SHLD1	chr20	5745401	5869395
SHLD1_chr20_5745401_5869395	0/0	t0008	1016	1	0	1	0	0	0	copy fasta	SHLD1	chr20	5745401	5869395
SHLD1_chr20_5745401_5869395	0/0	t0009	1016	1	0	0	1	0	0	copy fasta	SHLD1	chr20	5745401	5869395
SHLD1_chr20_5745401_5869395	0/0	t0010	1016	1	1	0	0	0	0	copy fasta	SHLD1	chr20	5745401	5869395
SHLD1_chr20_5745401_5869395	0/0	t0011	1016	1	0	1	0	0	0	copy fasta	SHLD1	chr20	5745401	5869395
SHLD1_chr20_5745401_5869395	0/0	t0012	1016	1	1	0	0	0	0	copy fasta	SHLD1	chr20	5745401	5869395
SHLD2_chr10_87090206_87196465	0/0	t0001	887	113	57	24	21	3	8	copy fasta	SHLD2	chr10	87090206	87196465
SHLD2_chr10_87090206_87196465	1/0	t0002	887	78	2	12	56	1	6	copy fasta	SHLD2	chr10	87090206	87196465