JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SHLD2_chr10_87090206_87196465	0/1	t0003	887	68	12	19	24	2	10	copy fasta	SHLD2	chr10	87090206	87196465
SHLD2_chr10_87090206_87196465	0/0	t0004	887	41	4	8	21	1	7	copy fasta	SHLD2	chr10	87090206	87196465
SHLD2_chr10_87090206_87196465	0/0	t0005	885	34	11	8	5	1	9	copy fasta	SHLD2	chr10	87090206	87196465
SHLD2_chr10_87090206_87196465	0/0	t0006	887	2	2	0	0	0	0	copy fasta	SHLD2	chr10	87090206	87196465
SHLD2_chr10_87090206_87196465	0/0	t0007	887	1	0	0	1	0	0	copy fasta	SHLD2	chr10	87090206	87196465
SHLD2_chr10_87090206_87196465	0/0	t0008	887	1	0	0	1	0	0	copy fasta	SHLD2	chr10	87090206	87196465
SHLD2_chr10_87090206_87196465	0/0	t0009	887	1	0	1	0	0	0	copy fasta	SHLD2	chr10	87090206	87196465
SHLD2_chr10_87090206_87196465	0/0	t0010	887	1	0	0	1	0	0	copy fasta	SHLD2	chr10	87090206	87196465
SHLD3_chr5_65620027_65635928	1/0	t0001	789	178	38	32	85	7	15	copy fasta	SHLD3	chr5	65620027	65635928
SHLD3_chr5_65620027_65635928	0/0	t0002	789	98	4	26	46	4	18	copy fasta	SHLD3	chr5	65620027	65635928
SHLD3_chr5_65620027_65635928	0/0	t0003	789	69	29	15	18	5	2	copy fasta	SHLD3	chr5	65620027	65635928
SHLD3_chr5_65620027_65635928	0/1	t0004	789	34	3	4	17	0	9	copy fasta	SHLD3	chr5	65620027	65635928
SHLD3_chr5_65620027_65635928	0/0	t0005	789	10	10	0	0	0	0	copy fasta	SHLD3	chr5	65620027	65635928
SHLD3_chr5_65620027_65635928	0/0	t0006	783	9	9	0	0	0	0	copy fasta	SHLD3	chr5	65620027	65635928
SHLD3_chr5_65620027_65635928	0/0	t0007	789	4	4	0	0	0	0	copy fasta	SHLD3	chr5	65620027	65635928
SHLD3_chr5_65620027_65635928	0/0	t0008	789	1	0	0	1	0	0	copy fasta	SHLD3	chr5	65620027	65635928
SHLD3_chr5_65620027_65635928	0/0	t0009	789	1	0	1	0	0	0	copy fasta	SHLD3	chr5	65620027	65635928
SHLD3_chr5_65620027_65635928	0/0	t0010	789	1	1	0	0	0	0	copy fasta	SHLD3	chr5	65620027	65635928
SHLD3_chr5_65620027_65635928	0/0	t0011	789	1	0	0	1	0	0	copy fasta	SHLD3	chr5	65620027	65635928
SHMT1_chr17_18322873_18368550	1/1	t0001	1076	149	18	30	77	4	18	copy fasta	SHMT1	chr17	18322873	18368550
SHMT1_chr17_18322873_18368550	0/0	t0002	1076	38	8	8	15	3	4	copy fasta	SHMT1	chr17	18322873	18368550
SHMT1_chr17_18322873_18368550	0/0	t0003	1076	18	16	1	1	0	0	copy fasta	SHMT1	chr17	18322873	18368550
SHMT1_chr17_18322873_18368550	0/0	t0004	1076	4	2	2	0	0	0	copy fasta	SHMT1	chr17	18322873	18368550
SHMT1_chr17_18322873_18368550	0/0	t0005	1076	3	2	1	0	0	0	copy fasta	SHMT1	chr17	18322873	18368550
SHMT1_chr17_18322873_18368550	0/0	t0006	1076	2	0	0	0	1	1	copy fasta	SHMT1	chr17	18322873	18368550
SHMT1_chr17_18322873_18368550	0/0	t0007	1076	2	2	0	0	0	0	copy fasta	SHMT1	chr17	18322873	18368550
SHMT1_chr17_18322873_18368550	0/0	t0008	1076	2	0	1	0	0	1	copy fasta	SHMT1	chr17	18322873	18368550
SHMT1_chr17_18322873_18368550	0/0	t0009	1076	1	0	0	1	0	0	copy fasta	SHMT1	chr17	18322873	18368550
SHMT1_chr17_18322873_18368550	0/0	t0010	1076	1	0	1	0	0	0	copy fasta	SHMT1	chr17	18322873	18368550
SHMT2_chr12_57224711_57239935	1/1	t0001	643	369	94	72	147	14	40	copy fasta	SHMT2	chr12	57224711	57239935
SHMT2_chr12_57224711_57239935	0/0	t0002	643	22	3	0	19	0	0	copy fasta	SHMT2	chr12	57224711	57239935
SHMT2_chr12_57224711_57239935	0/0	t0003	643	1	0	0	0	0	1	copy fasta	SHMT2	chr12	57224711	57239935
SHMT2_chr12_57224711_57239935	0/0	t0004	643	1	0	0	0	0	1	copy fasta	SHMT2	chr12	57224711	57239935
SHMT2_chr12_57224711_57239935	0/0	t0005	643	1	1	0	0	0	0	copy fasta	SHMT2	chr12	57224711	57239935
SHMT2_chr12_57224711_57239935	0/0	t0006	643	1	0	0	0	0	1	copy fasta	SHMT2	chr12	57224711	57239935
SHMT2_chr12_57224711_57239935	0/0	t0007	643	1	0	0	0	0	1	copy fasta	SHMT2	chr12	57224711	57239935
SHOC1_chr9_111681171_111799937	0/0	t0001	674	143	44	24	58	6	11	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	1/1	t0002	674	105	13	30	31	6	23	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	t0003	674	22	12	1	5	0	4	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	t0004	674	11	11	0	0	0	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	t0005	674	6	4	2	0	0	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	t0006	674	6	6	0	0	0	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	t0007	674	2	0	0	2	0	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	t0008	674	1	0	1	0	0	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC2_chr10_110914604_111018665	1/1	t0001	2136	239	44	30	127	7	29	copy fasta	SHOC2	chr10	110914604	111018665
SHOC2_chr10_110914604_111018665	0/0	t0002	2136	86	15	12	55	0	4	copy fasta	SHOC2	chr10	110914604	111018665
SHOC2_chr10_110914604_111018665	0/0	t0003	2135	16	14	2	0	0	0	copy fasta	SHOC2	chr10	110914604	111018665
SHOC2_chr10_110914604_111018665	0/0	t0004	2135	13	10	2	0	1	0	copy fasta	SHOC2	chr10	110914604	111018665
SHOC2_chr10_110914604_111018665	0/0	t0005	2137	5	0	1	2	0	2	copy fasta	SHOC2	chr10	110914604	111018665
SHOC2_chr10_110914604_111018665	0/0	t0006	2136	3	0	2	0	0	1	copy fasta	SHOC2	chr10	110914604	111018665