JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SHOX_chrX_625791_656584	0/0	t0004	6410	2	0	0	2	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0005	7045	2	0	0	2	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0006	6982	2	0	1	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0007	6723	2	2	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0008	6789	2	2	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0009	6410	2	0	0	2	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0010	6411	2	0	0	1	1	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0011	6813	2	0	0	2	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0012	7063	2	0	0	2	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0013	7064	2	0	0	2	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0014	6412	2	0	0	2	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0015	7064	2	0	0	0	1	1	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0016	6867	2	2	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0017	7060	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0018	7048	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0019	6333	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0020	6392	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0021	6726	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0022	6805	1	0	0	0	0	1	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0023	6412	1	0	1	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0024	6406	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0025	6401	1	0	1	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0026	6406	1	0	1	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0027	6326	1	0	1	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0028	6413	1	0	1	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0029	6409	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0030	6402	1	0	1	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0031	6403	1	0	1	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0032	6410	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0033	6414	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0034	6405	1	0	0	0	0	1	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0035	6409	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0036	6408	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0037	6405	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0038	6415	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0039	6407	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0040	6411	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0041	6411	1	0	0	0	0	1	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0042	6407	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0043	6408	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0044	6414	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0045	6406	1	0	1	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0046	7059	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0047	7051	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0048	6729	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0049	6730	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0050	6722	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0051	6722	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0052	6392	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0053	6726	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584