JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SHOX_chrX_625791_656584	0/0	t0054	6720	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0055	6983	1	0	1	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0056	6720	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0057	6720	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0058	6717	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0059	7043	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0060	7043	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0061	7043	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0062	6737	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0063	7069	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0064	7059	1	0	1	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0065	6900	1	0	0	0	0	1	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0066	6979	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0067	6978	1	0	1	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0068	6980	1	0	1	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0069	6986	1	0	1	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0070	6979	1	0	1	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0071	6987	1	0	1	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0072	6987	1	0	0	0	1	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0073	6986	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0074	6985	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0075	6986	1	0	1	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0076	6985	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0077	6978	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0078	6983	1	0	1	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0079	6982	1	0	1	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0080	6982	1	0	1	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0081	6982	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0082	6984	1	0	1	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0083	6981	1	0	0	0	0	1	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0084	6977	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0085	6987	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0086	6989	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0087	6985	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0088	6985	1	0	1	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0089	6154	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0090	6502	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0091	6722	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0092	6722	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0093	6719	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0094	6400	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0095	7046	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0096	6505	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0097	7069	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0098	6989	1	0	1	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0099	6985	1	0	0	0	1	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0100	6986	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0101	6983	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0102	6981	1	0	1	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0103	6980	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584