JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
SHOX_chrX_625791_656584	0/0	t0104	6387	1	1	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0105	6388	1	1	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0106	7056	1	0	0	1	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0107	7059	1	0	0	1	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0108	7056	1	0	0	0	1	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0109	7056	1	0	0	1	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0110	7060	1	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0111	7067	1	0	0	0	1	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	1/0	t0112	7056	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0113	7063	1	0	0	1	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0114	7060	1	0	0	1	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0115	7061	1	0	0	1	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0116	7058	1	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0117	7059	1	0	0	1	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0118	7058	1	0	0	1	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0119	7063	1	0	0	0	1	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0120	7061	1	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0121	7065	1	0	0	1	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0122	7062	1	0	0	1	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0123	7057	1	0	0	1	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0124	7060	1	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0125	6411	1	0	0	1	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0126	7064	1	0	0	1	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0127	7069	1	0	0	1	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0128	7062	1	0	0	1	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0129	7057	1	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0130	7065	1	0	0	1	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0131	7066	1	0	0	1	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0132	7067	1	0	0	1	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0133	6996	1	0	0	1	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0134	7140	1	0	0	1	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0135	6981	1	0	0	1	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0136	7063	1	0	0	1	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0137	7147	1	0	0	1	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0138	6411	1	0	0	1	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0139	6978	1	0	0	1	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0140	7559	1	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0141	7063	1	0	0	0	1	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0142	7059	1	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0143	7063	1	0	0	1	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0144	7060	1	0	0	1	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0145	7064	1	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0146	6978	1	0	0	1	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0147	6981	1	0	0	1	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0148	6978	1	0	0	1	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0149	7007	1	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0150	6997	1	0	0	1	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0151	7551	1	0	0	0	1	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0152	7061	1	0	0	1	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0153	7148	1	0	0	0	1	copy fasta	SHOX	chrX	625791	656584