JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SHOX_chrX_625791_656584	0/0	t0154	7003	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0155	7060	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0156	7063	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0157	6381	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0158	6805	1	0	0	0	0	1	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/1	t0159	6807	1	0	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0160	6810	1	0	0	0	0	1	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0161	6718	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0162	6721	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0163	6874	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0164	6866	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0165	6401	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0166	6402	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0167	6727	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0168	6403	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0169	6719	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0170	6317	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0171	6320	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0172	6397	1	0	1	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0173	6349	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0174	6725	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0175	6407	1	0	1	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0176	6402	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0177	6407	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0178	6325	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0179	6325	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0180	6311	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0181	6323	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0182	6318	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0183	6726	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0184	6405	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0185	6406	1	0	1	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0186	6406	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0187	6982	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0188	6982	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0189	6978	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0190	6505	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0191	6505	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0192	6723	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0193	6731	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0194	7156	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0195	7150	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0196	6556	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0197	6390	1	1	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0198	6989	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	t0199	6987	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHPK_chr17_3603240_3641250	0/1	t0001	2348	152	7	28	94	4	18	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	t0002	2352	61	1	3	44	3	10	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	t0003	2354	59	39	3	14	0	3	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	1/0	t0004	2352	30	9	11	0	1	8	copy fasta	SHPK	chr17	3603240	3641250