Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BCDIN3D_chr12_49831043_49848106	0/0	t0013	2333	6	6	0	0	0	0	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	t0014	2335	5	5	0	0	0	0	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	t0015	2346	5	5	0	0	0	0	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	t0016	2348	4	0	0	4	0	0	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	t0017	2348	3	3	0	0	0	0	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	t0018	2349	2	2	0	0	0	0	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	t0019	2347	2	1	0	0	1	0	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	t0020	2347	2	0	0	2	0	0	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	t0021	2348	2	2	0	0	0	0	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	t0022	2690	2	2	0	0	0	0	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	t0023	2347	1	0	0	1	0	0	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	t0024	2336	1	1	0	0	0	0	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	t0025	2336	1	0	0	1	0	0	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	t0026	2334	1	0	1	0	0	0	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	t0027	2348	1	0	1	0	0	0	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	t0028	2347	1	0	1	0	0	0	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	t0029	2347	1	0	0	0	0	1	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	t0030	2348	1	0	0	1	0	0	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	t0031	2346	1	0	0	1	0	0	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	t0032	2346	1	1	0	0	0	0	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	t0033	2346	1	0	0	0	1	0	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	t0034	2348	1	0	0	0	0	1	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	t0035	2349	1	0	1	0	0	0	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	t0036	2349	1	0	0	1	0	0	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	t0037	2349	1	0	0	0	0	1	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	t0038	2348	1	0	0	1	0	0	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	t0039	2348	1	0	0	0	0	1	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	t0040	2348	1	0	0	1	0	0	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	t0041	2347	1	0	0	1	0	0	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	t0042	2348	1	0	0	1	0	0	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	t0043	2686	1	1	0	0	0	0	copy fasta	BCDIN3D	chr12	49831043	49848106
BCDIN3D_chr12_49831043_49848106	0/0	t0044	2346	1	0	0	0	0	1	copy fasta	BCDIN3D	chr12	49831043	49848106
BCHE_chr3_165767904_165842423	0/0	t0001	598	167	26	39	86	4	12	copy fasta	BCHE	chr3	165767904	165842423
BCHE_chr3_165767904_165842423	0/0	t0002	598	66	25	4	31	1	5	copy fasta	BCHE	chr3	165767904	165842423
BCHE_chr3_165767904_165842423	1/0	t0003	597	42	21	4	12	2	2	copy fasta	BCHE	chr3	165767904	165842423
BCHE_chr3_165767904_165842423	0/1	t0004	598	11	1	3	0	1	5	copy fasta	BCHE	chr3	165767904	165842423
BCHE_chr3_165767904_165842423	0/0	t0005	598	5	4	1	0	0	0	copy fasta	BCHE	chr3	165767904	165842423
BCHE_chr3_165767904_165842423	0/0	t0006	598	5	4	1	0	0	0	copy fasta	BCHE	chr3	165767904	165842423
BCHE_chr3_165767904_165842423	0/0	t0007	597	3	3	0	0	0	0	copy fasta	BCHE	chr3	165767904	165842423
BCHE_chr3_165767904_165842423	0/0	t0008	598	3	3	0	0	0	0	copy fasta	BCHE	chr3	165767904	165842423
BCHE_chr3_165767904_165842423	0/0	t0009	597	1	0	0	1	0	0	copy fasta	BCHE	chr3	165767904	165842423
BCHE_chr3_165767904_165842423	0/0	t0010	598	1	1	0	0	0	0	copy fasta	BCHE	chr3	165767904	165842423
BCKDHA_chr19_41392818_41430002	1/1	t0001	405	361	87	60	150	16	46	copy fasta	BCKDHA	chr19	41392818	41430002
BCKDHA_chr19_41392818_41430002	0/0	t0002	405	5	5	0	0	0	0	copy fasta	BCKDHA	chr19	41392818	41430002
BCKDHA_chr19_41392818_41430002	0/0	t0003	405	5	0	0	5	0	0	copy fasta	BCKDHA	chr19	41392818	41430002
BCKDHA_chr19_41392818_41430002	0/0	t0004	405	2	0	0	0	0	2	copy fasta	BCKDHA	chr19	41392818	41430002
BCKDHA_chr19_41392818_41430002	0/0	t0005	405	1	0	0	1	0	0	copy fasta	BCKDHA	chr19	41392818	41430002
BCKDHB_chr6_80101671_80351270	0/0	t0001	2485	80	3	17	47	3	10	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	t0002	2485	57	8	9	29	3	8	copy fasta	BCKDHB	chr6	80101671	80351270
BCKDHB_chr6_80101671_80351270	0/0	t0003	2485	27	27	0	0	0	0	copy fasta	BCKDHB	chr6	80101671	80351270