JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SHPK_chr17_3603240_3641250	0/0	t0005	2364	15	0	11	0	4	0	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	t0006	2346	9	6	2	0	0	1	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	t0007	2348	8	0	6	0	2	0	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	t0008	2348	6	0	5	0	1	0	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	t0009	2346	5	1	4	0	0	0	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	t0010	2344	5	0	0	5	0	0	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	t0011	2366	5	4	1	0	0	0	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	t0012	2346	3	3	0	0	0	0	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	t0013	2366	3	3	0	0	0	0	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	t0014	2356	2	2	0	0	0	0	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	t0015	2342	2	0	0	2	0	0	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	t0016	2348	2	0	0	0	0	2	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	t0017	2354	1	1	0	0	0	0	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	t0018	2348	1	0	1	0	0	0	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	t0019	2352	1	0	1	0	0	0	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	t0020	2356	1	0	0	1	0	0	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	t0021	2356	1	0	0	0	0	1	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	t0022	2352	1	0	0	0	1	0	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	t0023	2352	1	0	1	0	0	0	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	t0024	2356	1	1	0	0	0	0	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	t0025	2348	1	0	1	0	0	0	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	t0026	2352	1	0	1	0	0	0	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	t0027	2362	1	1	0	0	0	0	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	t0028	2366	1	0	1	0	0	0	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	t0029	2348	1	0	1	0	0	0	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	t0030	2348	1	0	0	0	0	1	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	t0031	2348	1	0	1	0	0	0	copy fasta	SHPK	chr17	3603240	3641250
SHPRH_chr6_145879807_145969358	0/0	t0001	2545	177	26	35	98	5	13	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	0/1	t0002	2546	90	14	11	48	3	13	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	0/0	t0003	2546	26	23	3	0	0	0	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	0/0	t0004	2546	21	1	3	12	2	3	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	0/0	t0005	2546	15	14	1	0	0	0	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	0/0	t0006	2545	8	0	3	0	1	4	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	0/0	t0007	2545	6	0	0	6	0	0	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	0/0	t0008	2545	2	0	0	2	0	0	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	1/0	t0009	2545	2	1	0	0	0	0	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	0/0	t0010	2545	1	0	0	1	0	0	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	0/0	t0011	2545	1	0	0	1	0	0	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	0/0	t0012	2546	1	0	0	0	1	0	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	0/0	t0013	2546	1	0	0	0	0	1	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	0/0	t0014	2546	1	1	0	0	0	0	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	0/0	t0015	2546	1	1	0	0	0	0	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	0/0	t0016	2546	1	1	0	0	0	0	copy fasta	SHPRH	chr6	145879807	145969358
SHQ1_chr3_72744277_72853445	1/1	t0001	1113	201	72	39	65	6	17	copy fasta	SHQ1	chr3	72744277	72853445
SHQ1_chr3_72744277_72853445	0/0	t0002	1108	5	5	0	0	0	0	copy fasta	SHQ1	chr3	72744277	72853445
SHQ1_chr3_72744277_72853445	0/0	t0003	1113	5	0	0	5	0	0	copy fasta	SHQ1	chr3	72744277	72853445
SHQ1_chr3_72744277_72853445	0/0	t0004	1113	4	4	0	0	0	0	copy fasta	SHQ1	chr3	72744277	72853445
SHQ1_chr3_72744277_72853445	0/0	t0005	1113	3	3	0	0	0	0	copy fasta	SHQ1	chr3	72744277	72853445
SHQ1_chr3_72744277_72853445	0/0	t0006	1113	1	1	0	0	0	0	copy fasta	SHQ1	chr3	72744277	72853445
SHQ1_chr3_72744277_72853445	0/0	t0007	1113	1	0	1	0	0	0	copy fasta	SHQ1	chr3	72744277	72853445