JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SHQ1_chr3_72744277_72853445	0/0	t0008	1113	1	1	0	0	0	0	copy fasta	SHQ1	chr3	72744277	72853445
SHQ1_chr3_72744277_72853445	0/0	t0009	1113	1	0	0	0	0	1	copy fasta	SHQ1	chr3	72744277	72853445
SHROOM1_chr5_132817141_132835647	1/0	t0001	1210	111	32	14	60	1	3	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/1	t0002	1211	110	19	12	60	2	16	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	t0003	1212	36	9	5	18	1	3	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	t0004	1209	21	10	7	2	2	0	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	t0005	1213	17	6	3	6	1	1	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	t0006	1216	14	0	4	7	1	2	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	t0007	1217	13	1	1	9	0	2	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	t0008	1208	10	6	4	0	0	0	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	t0009	1210	8	0	3	5	0	0	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	t0010	1219	7	2	1	2	2	0	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	t0011	1218	6	2	1	1	1	1	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	t0012	1215	6	1	0	3	0	2	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	t0013	1214	6	3	1	2	0	0	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	t0014	1210	5	0	0	5	0	0	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	t0015	1220	4	0	0	4	0	0	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	t0016	1211	3	0	3	0	0	0	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	t0017	1221	2	0	0	2	0	0	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	t0018	1211	2	0	2	0	0	0	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	t0019	1209	2	0	2	0	0	0	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	t0020	1211	1	0	0	1	0	0	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	t0021	1210	1	0	0	1	0	0	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	t0022	1211	1	0	0	1	0	0	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	t0023	1210	1	0	0	1	0	0	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	t0024	1211	1	0	0	0	0	1	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	t0025	1210	1	1	0	0	0	0	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	t0026	1217	1	0	0	0	0	1	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	t0027	1208	1	0	1	0	0	0	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	t0028	1210	1	0	0	1	0	0	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	t0029	1211	1	1	0	0	0	0	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	t0030	1210	1	0	0	1	0	0	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	t0031	1211	1	1	0	0	0	0	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM1_chr5_132817141_132835647	0/0	t0032	1211	1	0	0	0	1	0	copy fasta	SHROOM1	chr5	132817141	132835647
SHROOM2_chrX_9781429_9954443	1/0	t0001	2624	105	15	27	35	8	19	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/1	t0002	2624	51	16	14	17	1	2	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	t0003	2624	43	9	4	29	0	1	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	t0004	2624	10	9	1	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	t0005	2624	5	5	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	t0006	2624	5	5	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	t0007	2624	4	0	0	4	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	t0008	2622	4	3	1	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	t0009	2624	3	1	2	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	t0010	2624	2	0	0	2	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	t0011	2624	2	2	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	t0012	2624	1	1	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	t0013	2624	1	1	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	t0014	2624	1	1	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	t0015	2612	1	0	0	1	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	t0016	2625	1	0	0	1	0	0	copy fasta	SHROOM2	chrX	9781429	9954443