JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SHROOM2_chrX_9781429_9954443	0/0	t0017	2624	1	0	1	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	t0018	2624	1	0	0	1	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	t0019	2624	1	0	0	0	1	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	t0020	2623	1	1	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	t0021	2624	1	1	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	t0022	2623	1	0	0	1	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	t0023	2624	1	0	1	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	t0024	2624	1	0	0	0	1	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	t0025	2624	1	0	0	0	0	1	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	t0026	2624	1	0	0	1	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	t0027	2624	1	0	0	1	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	t0028	2625	1	0	0	1	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	t0029	2624	1	0	0	0	0	1	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	t0030	2624	1	0	0	1	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	t0031	2624	1	0	0	1	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	t0032	2624	1	1	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM2_chrX_9781429_9954443	0/0	t0033	2624	1	1	0	0	0	0	copy fasta	SHROOM2	chrX	9781429	9954443
SHROOM3_chr4_76430229_76788253	1/1	t0001	4901	106	31	19	42	3	9	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	t0002	4901	37	4	7	19	2	5	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	t0003	4898	15	0	0	11	0	4	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	t0004	4901	5	0	5	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	t0005	4901	5	5	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	t0006	4877	5	5	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	t0007	4902	4	3	1	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	t0008	4898	4	0	0	3	0	1	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	t0009	4901	4	4	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	t0010	4897	4	0	0	3	0	1	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	t0011	4901	2	2	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	t0012	4901	2	0	0	2	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	t0013	4901	2	2	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	t0014	4898	2	2	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	t0015	4902	1	1	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	t0016	4902	1	1	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	t0017	4902	1	1	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	t0018	4898	1	0	0	1	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	t0019	4898	1	0	1	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	t0020	4901	1	1	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	t0021	4901	1	0	1	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	t0022	4901	1	0	0	1	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	t0023	4901	1	0	0	1	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	t0024	4901	1	0	1	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	t0025	4901	1	1	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	t0026	4901	1	0	0	0	0	1	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	t0027	4901	1	1	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	t0028	4901	1	0	0	0	1	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	t0029	4901	1	0	0	1	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	t0030	4901	1	0	0	1	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	t0031	4901	1	0	1	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	t0032	4897	1	0	0	0	0	1	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	t0033	4897	1	0	0	1	0	0	copy fasta	SHROOM3	chr4	76430229	76788253