JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SHROOM3_chr4_76430229_76788253	0/0	t0034	4901	1	1	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM3_chr4_76430229_76788253	0/0	t0035	4874	1	1	0	0	0	0	copy fasta	SHROOM3	chr4	76430229	76788253
SHROOM4_chrX_50581796_50819194	0/0	t0001	10066	84	7	10	52	3	12	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	t0002	10072	12	0	4	7	0	1	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	t0003	10072	8	7	1	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/1	t0004	10070	6	2	0	1	0	2	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	t0005	10066	6	6	0	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	t0006	10086	6	5	1	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	t0007	10074	4	4	0	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	t0008	10068	4	4	0	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	t0009	10068	4	1	3	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	t0010	10076	3	3	0	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	t0011	10072	2	1	1	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	t0012	10066	1	0	1	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	t0013	10057	1	1	0	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	t0014	10065	1	0	0	1	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	t0015	10081	1	1	0	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	t0016	10085	1	1	0	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	t0017	10089	1	1	0	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	t0018	10068	1	0	0	1	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	t0019	10078	1	0	1	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	t0020	10081	1	1	0	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	t0021	10066	1	0	0	1	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	t0022	10066	1	0	0	1	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	t0023	10066	1	0	1	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	t0024	10066	1	0	0	1	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	t0025	10066	1	0	0	1	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	t0026	10077	1	0	0	0	0	1	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	t0027	10082	1	1	0	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	t0028	10066	1	0	1	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	t0029	10066	1	0	0	0	1	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	t0030	10066	1	0	1	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	t0031	10069	1	0	0	1	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	t0032	10077	1	0	1	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	t0033	10069	1	0	0	1	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	t0034	10069	1	0	0	1	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	t0035	10064	1	1	0	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	t0036	10060	1	1	0	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	t0037	10064	1	1	0	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	t0038	10076	1	1	0	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	1/0	t0039	10076	1	0	0	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	t0040	10080	1	1	0	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	t0041	10084	1	1	0	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	t0042	10084	1	1	0	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	t0043	10068	1	0	1	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	t0044	10086	1	1	0	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	t0045	10100	1	1	0	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	t0046	10093	1	1	0	0	0	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHROOM4_chrX_50581796_50819194	0/0	t0047	10097	1	0	0	0	1	0	copy fasta	SHROOM4	chrX	50581796	50819194
SHTN1_chr10_116876477_117010187	0/0	t0001	4976	69	9	11	41	0	8	copy fasta	SHTN1	chr10	116876477	117010187