JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SHTN1_chr10_116876477_117010187	0/0	t0002	4978	23	4	6	11	0	2	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0003	4978	21	10	1	9	0	1	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/1	t0004	4977	21	3	8	7	0	2	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0005	4979	14	0	0	14	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0006	4975	9	1	0	8	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0007	4978	8	0	2	6	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0008	4978	7	0	5	2	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0009	4975	6	6	0	0	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0010	4976	6	0	5	0	0	1	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0011	4978	6	3	0	1	1	1	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0012	4977	5	4	0	1	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0013	4977	5	0	0	4	0	1	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0014	4976	5	5	0	0	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0015	4979	4	4	0	0	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0016	4979	4	4	0	0	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0017	4977	4	0	0	4	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0018	4976	4	0	0	4	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0019	4975	3	3	0	0	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0020	4976	3	3	0	0	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0021	4976	3	1	2	0	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0022	4980	2	0	0	2	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0023	4976	2	2	0	0	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0024	4977	2	2	0	0	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0025	4983	2	2	0	0	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0026	4983	2	2	0	0	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0027	4976	2	0	2	0	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0028	4978	2	2	0	0	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0029	4977	2	0	0	0	2	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0030	4978	2	0	0	2	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0031	4977	2	1	0	0	0	1	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0032	4980	2	0	2	0	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0033	4976	2	0	0	0	1	1	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0034	4979	2	2	0	0	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0035	4976	1	0	1	0	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0036	4977	1	1	0	0	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0037	4978	1	0	1	0	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0038	4975	1	0	0	1	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0039	4990	1	1	0	0	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0040	4975	1	1	0	0	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0041	4980	1	0	1	0	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0042	4978	1	0	1	0	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0043	4981	1	1	0	0	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0044	4977	1	0	0	1	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0045	4977	1	1	0	0	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0046	4978	1	0	0	1	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0047	4974	1	1	0	0	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	1/0	t0048	4976	1	0	0	0	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0049	4977	1	0	0	1	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0050	4978	1	0	0	1	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0051	4979	1	1	0	0	0	0	copy fasta	SHTN1	chr10	116876477	117010187