JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SHTN1_chr10_116876477_117010187	0/0	t0052	4982	1	0	1	0	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0053	4976	1	0	0	0	0	1	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0054	4976	1	0	0	0	0	1	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0055	4975	1	0	0	1	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0056	4974	1	0	0	1	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0057	4976	1	0	0	1	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0058	4978	1	0	0	1	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0059	4977	1	0	0	0	0	1	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0060	4978	1	0	0	0	0	1	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0061	4975	1	0	0	1	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0062	4977	1	1	0	0	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0063	4979	1	0	0	1	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0064	4980	1	1	0	0	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0065	4977	1	0	0	0	0	1	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0066	4976	1	0	0	1	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0067	4976	1	0	1	0	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0068	4976	1	0	0	0	0	1	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0069	4975	1	1	0	0	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SHTN1_chr10_116876477_117010187	0/0	t0070	4977	1	1	0	0	0	0	copy fasta	SHTN1	chr10	116876477	117010187
SIAE_chr11_124628113_124678739	1/1	t0001	3870	163	27	47	56	5	26	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	t0002	3869	32	29	1	2	0	0	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	t0003	3869	25	3	0	22	0	0	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	t0004	3871	8	6	2	0	0	0	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	t0005	3871	8	3	1	2	2	0	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	t0006	3869	6	0	0	6	0	0	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	t0007	3872	5	5	0	0	0	0	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	t0008	3870	5	0	0	5	0	0	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	t0009	3870	4	0	3	0	0	1	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	t0010	3871	3	0	2	0	0	1	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	t0011	3872	3	3	0	0	0	0	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	t0012	3870	2	0	0	2	0	0	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	t0013	3870	2	0	0	0	0	2	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	t0014	3894	2	0	0	2	0	0	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	t0015	3871	2	2	0	0	0	0	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	t0016	3870	2	1	0	0	0	1	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	t0017	3870	2	2	0	0	0	0	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	t0018	3869	2	0	0	2	0	0	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	t0019	3869	1	1	0	0	0	0	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	t0020	3870	1	1	0	0	0	0	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	t0021	3870	1	0	0	1	0	0	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	t0022	3870	1	0	0	1	0	0	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	t0023	3870	1	0	0	0	0	1	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	t0024	3871	1	0	0	0	1	0	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	t0025	3872	1	1	0	0	0	0	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	t0026	3870	1	1	0	0	0	0	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	t0027	3869	1	1	0	0	0	0	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	t0028	3869	1	1	0	0	0	0	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	t0029	3870	1	1	0	0	0	0	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	t0030	3869	1	1	0	0	0	0	copy fasta	SIAE	chr11	124628113	124678739
SIAE_chr11_124628113_124678739	0/0	t0031	3869	1	0	0	1	0	0	copy fasta	SIAE	chr11	124628113	124678739