JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SIAE_chr11_124628113_124678739	0/0	t0032	3870	1	1	0	0	0	0	copy fasta	SIAE	chr11	124628113	124678739
SIAH1_chr16_48355531_48390413	1/1	t0001	1262	177	37	28	82	9	19	copy fasta	SIAH1	chr16	48355531	48390413
SIAH1_chr16_48355531_48390413	0/0	t0002	1259	38	22	9	3	2	2	copy fasta	SIAH1	chr16	48355531	48390413
SIAH1_chr16_48355531_48390413	0/0	t0003	1262	11	1	5	5	0	0	copy fasta	SIAH1	chr16	48355531	48390413
SIAH1_chr16_48355531_48390413	0/0	t0004	1259	10	10	0	0	0	0	copy fasta	SIAH1	chr16	48355531	48390413
SIAH1_chr16_48355531_48390413	0/0	t0005	1255	5	5	0	0	0	0	copy fasta	SIAH1	chr16	48355531	48390413
SIAH1_chr16_48355531_48390413	0/0	t0006	1259	4	1	1	0	1	1	copy fasta	SIAH1	chr16	48355531	48390413
SIAH1_chr16_48355531_48390413	0/0	t0007	1262	3	3	0	0	0	0	copy fasta	SIAH1	chr16	48355531	48390413
SIAH1_chr16_48355531_48390413	0/0	t0008	1268	3	0	0	3	0	0	copy fasta	SIAH1	chr16	48355531	48390413
SIAH1_chr16_48355531_48390413	0/0	t0009	1259	1	0	1	0	0	0	copy fasta	SIAH1	chr16	48355531	48390413
SIAH1_chr16_48355531_48390413	0/0	t0010	1259	1	0	1	0	0	0	copy fasta	SIAH1	chr16	48355531	48390413
SIAH1_chr16_48355531_48390413	0/0	t0011	1259	1	1	0	0	0	0	copy fasta	SIAH1	chr16	48355531	48390413
SIAH1_chr16_48355531_48390413	0/0	t0012	1259	1	0	1	0	0	0	copy fasta	SIAH1	chr16	48355531	48390413
SIAH1_chr16_48355531_48390413	0/0	t0013	1262	1	0	0	1	0	0	copy fasta	SIAH1	chr16	48355531	48390413
SIAH2_chr3_150736125_150768169	1/1	t0001	1337	203	41	45	75	6	34	copy fasta	SIAH2	chr3	150736125	150768169
SIAH2_chr3_150736125_150768169	0/0	t0002	1339	85	15	5	58	1	6	copy fasta	SIAH2	chr3	150736125	150768169
SIAH2_chr3_150736125_150768169	0/0	t0003	1338	14	4	0	9	0	1	copy fasta	SIAH2	chr3	150736125	150768169
SIAH2_chr3_150736125_150768169	0/0	t0004	1337	13	13	0	0	0	0	copy fasta	SIAH2	chr3	150736125	150768169
SIAH2_chr3_150736125_150768169	0/0	t0005	1339	6	6	0	0	0	0	copy fasta	SIAH2	chr3	150736125	150768169
SIAH2_chr3_150736125_150768169	0/0	t0006	1339	5	5	0	0	0	0	copy fasta	SIAH2	chr3	150736125	150768169
SIAH2_chr3_150736125_150768169	0/0	t0007	1337	4	4	0	0	0	0	copy fasta	SIAH2	chr3	150736125	150768169
SIAH2_chr3_150736125_150768169	0/0	t0008	1337	4	0	0	0	3	1	copy fasta	SIAH2	chr3	150736125	150768169
SIAH2_chr3_150736125_150768169	0/0	t0009	1340	2	0	1	1	0	0	copy fasta	SIAH2	chr3	150736125	150768169
SIAH2_chr3_150736125_150768169	0/0	t0010	1339	2	2	0	0	0	0	copy fasta	SIAH2	chr3	150736125	150768169
SIAH2_chr3_150736125_150768169	0/0	t0011	1337	1	1	0	0	0	0	copy fasta	SIAH2	chr3	150736125	150768169
SIAH2_chr3_150736125_150768169	0/0	t0012	1337	1	0	1	0	0	0	copy fasta	SIAH2	chr3	150736125	150768169
SIAH2_chr3_150736125_150768169	0/0	t0013	1337	1	1	0	0	0	0	copy fasta	SIAH2	chr3	150736125	150768169
SIAH2_chr3_150736125_150768169	0/0	t0014	1337	1	1	0	0	0	0	copy fasta	SIAH2	chr3	150736125	150768169
SIAH2_chr3_150736125_150768169	0/0	t0015	1337	1	1	0	0	0	0	copy fasta	SIAH2	chr3	150736125	150768169
SIAH2_chr3_150736125_150768169	0/0	t0016	1337	1	0	0	1	0	0	copy fasta	SIAH2	chr3	150736125	150768169
SIAH2_chr3_150736125_150768169	0/0	t0017	1339	1	1	0	0	0	0	copy fasta	SIAH2	chr3	150736125	150768169
SIAH2_chr3_150736125_150768169	0/0	t0018	1339	1	1	0	0	0	0	copy fasta	SIAH2	chr3	150736125	150768169
SIAH3_chr13_45772242_45856753	0/0	t0001	6260	56	1	10	30	3	12	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0002	6266	32	0	11	13	4	4	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/1	t0003	6262	25	1	0	20	0	3	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0004	6260	22	2	6	11	0	3	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0005	6267	17	0	8	7	0	2	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0006	6267	14	2	7	0	1	4	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	1/0	t0007	6266	10	0	5	0	1	3	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0008	6260	10	4	2	0	1	3	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0009	6259	9	9	0	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0010	6261	9	0	0	9	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0011	6261	5	3	2	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0012	6261	5	5	0	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0013	6266	4	0	0	3	0	1	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0014	6260	4	2	0	0	2	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0015	6265	4	1	1	1	1	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0016	6261	4	4	0	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0017	6260	4	3	1	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0018	6261	4	4	0	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753