JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SIAH3_chr13_45772242_45856753	0/0	t0019	6262	3	0	0	3	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0020	6261	3	3	0	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0021	6261	3	3	0	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0022	6260	3	0	1	2	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0023	6267	3	2	1	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0024	6266	3	2	1	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0025	6260	2	0	0	2	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0026	6261	2	0	0	2	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0027	6264	2	2	0	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0028	6261	2	0	2	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0029	6260	2	2	0	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0030	6261	2	1	0	0	0	1	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0031	6260	2	0	0	0	1	1	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0032	6260	2	0	2	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0033	6267	2	2	0	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0034	6266	2	0	0	0	1	1	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0035	6266	2	0	2	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0036	6266	2	2	0	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0037	6267	2	2	0	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0038	6267	2	2	0	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0039	6267	2	2	0	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0040	6262	1	0	0	1	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0041	6261	1	0	0	1	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0042	6260	1	0	1	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0043	6262	1	0	0	1	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0044	6260	1	0	0	1	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0045	6268	1	0	0	1	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0046	6259	1	0	0	1	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0047	6259	1	0	0	0	0	1	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0048	6260	1	0	0	1	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0049	6260	1	1	0	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0050	6264	1	1	0	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0051	6261	1	1	0	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0052	6261	1	0	1	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0053	6266	1	1	0	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0054	6265	1	0	0	1	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0055	6262	1	0	0	1	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0056	6261	1	1	0	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0057	6261	1	1	0	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0058	6260	1	0	1	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0059	6260	1	0	0	1	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0060	6260	1	0	1	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0061	6261	1	0	0	1	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0062	6260	1	0	1	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0063	6260	1	0	1	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0064	6260	1	0	0	0	0	1	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0065	6261	1	1	0	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0066	6260	1	1	0	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0067	6259	1	1	0	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0068	6260	1	0	1	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753