JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SIAH3_chr13_45772242_45856753	0/0	t0069	6260	1	0	0	1	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0070	6261	1	0	0	1	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0071	6262	1	0	0	1	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0072	6260	1	0	0	1	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0073	6260	1	0	1	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0074	6260	1	0	0	1	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0075	6260	1	0	1	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0076	6260	1	0	0	0	0	1	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0077	6260	1	0	0	1	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0078	6259	1	1	0	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0079	6262	1	0	0	1	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0080	6266	1	0	0	1	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0081	6266	1	1	0	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0082	6267	1	1	0	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0083	6266	1	1	0	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0084	6267	1	0	1	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0085	6267	1	0	1	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0086	6266	1	0	1	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0087	6266	1	0	0	0	0	1	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0088	6265	1	1	0	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0089	6266	1	0	0	0	1	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0090	6266	1	1	0	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0091	6261	1	1	0	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0092	6267	1	0	0	0	0	1	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0093	6275	1	1	0	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0094	6266	1	0	1	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0095	6267	1	1	0	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0096	6266	1	0	0	0	0	1	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0097	6266	1	0	1	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0098	6266	1	0	0	0	0	1	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0099	6267	1	0	0	0	0	1	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0100	6268	1	0	0	1	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0101	6268	1	0	0	1	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0102	6267	1	1	0	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0103	6267	1	0	0	0	0	1	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0104	6267	1	0	1	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0105	6262	1	0	0	0	0	1	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0106	6266	1	0	1	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0107	6267	1	0	0	1	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0108	6266	1	1	0	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0109	6260	1	0	1	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0110	6261	1	1	0	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0111	6261	1	0	1	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0112	6259	1	1	0	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0113	6262	1	1	0	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0114	6267	1	1	0	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0115	6267	1	1	0	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0116	6266	1	1	0	0	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIAH3_chr13_45772242_45856753	0/0	t0117	6260	1	0	0	1	0	0	copy fasta	SIAH3	chr13	45772242	45856753
SIDT1_chr3_113527555_113634575	1/1	t0001	2335	304	76	54	132	14	26	copy fasta	SIDT1	chr3	113527555	113634575