JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SIDT1_chr3_113527555_113634575	0/0	t0002	2335	4	4	0	0	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	t0003	2335	4	4	0	0	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	t0004	2335	2	2	0	0	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	t0005	2335	1	0	0	0	0	1	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	t0006	2335	1	0	0	0	0	1	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	t0007	2335	1	1	0	0	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT1_chr3_113527555_113634575	0/0	t0008	2335	1	1	0	0	0	0	copy fasta	SIDT1	chr3	113527555	113634575
SIDT2_chr11_117173743_117202442	1/0	t0001	1898	206	39	28	106	5	27	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/1	t0002	1898	178	29	40	84	9	15	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	t0003	1898	6	2	4	0	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	t0004	1898	6	5	1	0	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	t0005	1898	6	6	0	0	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	t0006	1898	5	4	1	0	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	t0007	1898	4	0	2	0	2	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	t0008	1898	3	3	0	0	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	t0009	1898	2	0	0	2	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	t0010	1898	2	2	0	0	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	t0011	1898	2	2	0	0	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	t0012	1898	2	2	0	0	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	t0013	1898	2	0	0	0	0	2	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	t0014	1898	1	0	0	1	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	t0015	1898	1	0	1	0	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	t0016	1898	1	0	0	1	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	t0017	1898	1	0	1	0	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	t0018	1898	1	0	1	0	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIDT2_chr11_117173743_117202442	0/0	t0019	1898	1	0	1	0	0	0	copy fasta	SIDT2	chr11	117173743	117202442
SIGIRR_chr11_400716_419999	1/1	t0001	511	237	70	45	88	12	20	copy fasta	SIGIRR	chr11	400716	419999
SIGIRR_chr11_400716_419999	0/0	t0002	511	3	3	0	0	0	0	copy fasta	SIGIRR	chr11	400716	419999
SIGIRR_chr11_400716_419999	0/0	t0003	531	1	0	1	0	0	0	copy fasta	SIGIRR	chr11	400716	419999
SIGIRR_chr11_400716_419999	0/0	t0004	511	1	1	0	0	0	0	copy fasta	SIGIRR	chr11	400716	419999
SIGLEC10_chr19_51405020_51422642	1/1	t0001	1141	202	9	42	115	14	20	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	t0002	1141	62	33	14	0	2	13	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	t0003	1143	27	2	7	15	0	3	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	t0004	1141	26	14	0	10	1	1	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	t0005	1141	25	10	4	8	0	3	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	t0006	1143	16	12	1	3	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	t0007	1141	14	1	8	0	0	5	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	t0008	1141	6	1	2	3	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	t0009	1143	5	1	0	4	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	t0010	1143	4	4	0	0	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	t0011	1141	4	0	1	0	0	3	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	t0012	1141	4	0	0	4	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	t0013	1143	3	3	0	0	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	t0014	1143	2	0	0	2	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	t0015	1141	2	0	0	0	0	2	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	t0016	1143	2	2	0	0	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	t0017	1141	2	2	0	0	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	t0018	1141	1	0	0	1	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	t0019	1143	1	0	0	1	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642
SIGLEC10_chr19_51405020_51422642	0/0	t0020	1143	1	1	0	0	0	0	copy fasta	SIGLEC10	chr19	51405020	51422642